Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
XG_chrX_2747040_2821500	2773486	G G	GGAAGGAA others(25): Show GGAAGGAAGGAAGGAGAGAAGGAAGGAAGGAGA	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01433.hp2 NA19080.hp1 HG00609.hp1 HG01433.hp2 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0232 a0001c0001t0001g0298 a0001c0001t0003g0241 a0001c0001t0001g0232 a0001c0001t0001g0298 a0001c0001t0003g0241	3	292	0.0103	32	c.104 others(49): Show c.104-1102_104-1071dupAGAAGGAAGGAAGGAGAGAAGGAAGGAA GGAG	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773505	A A	AGGAAGGA others(25): Show AGGAAGGAAGGAGAGAGGGAAGGAAGGAGAGAG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00408.hp1 HG00438.hp2 others(16): Show HG00323.hp2 HG00408.hp1 HG00438.hp2 HG01516.hp1 HG01517.hp1 HG03704.hp1 NA18747.hp2 NA18947.hp2 NA18948.hp1 NA18950.hp2 NA18953.hp2 NA18962.hp2 NA18981.hp2 NA19068.hp1 NA19077.hp1 NA19079.hp1 NA19084.hp1 NA19087.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0029 a0001c0001t0033	a0001c0001t0001g0041 a0001c0001t0001g0111 a0001c0001t0001g0130 others(16): Show a0001c0001t0001g0041 a0001c0001t0001g0111 a0001c0001t0001g0130 a0001c0001t0001g0184 a0001c0001t0001g0221 a0001c0001t0001g0224 a0001c0001t0001g0226 a0001c0001t0001g0229 a0001c0001t0001g0252 a0001c0001t0001g0259 a0001c0001t0001g0265 a0001c0001t0001g0267 a0001c0001t0003g0099 a0001c0001t0003g0106 a0001c0001t0004g0112 a0001c0001t0004g0194 a0001c0001t0004g0266 a0001c0001t0029g0279 a0001c0001t0033g0268	19	277	0.0686	32	c.104 others(49): Show c.104-1196_104-1195insGGGAAGGAAGGAGAGAGGGAAGGAAGGA GAGA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773521	A A	AGGAAGGA others(25): Show AGGAAGGAAGGAGAGAGGGAAGGAAGGAGAGAG	intron_variant intron_variant	MODIFIER	NA18961.hp1 NA18989.hp1 NA18961.hp1 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0216 a0001c0001t0004g0220 a0001c0001t0004g0216 a0001c0001t0004g0220	2	251	0.0080	32	c.104 others(49): Show c.104-1180_104-1179insGGGAAGGAAGGAGAGAGGGAAGGAAGGA GAGA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773633	A A	AGGAAGGA others(25): Show AGGAAGGAAGGAGAGAGGGAAGGAAGGAGAGAG	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	301	0.0033	32	c.104 others(49): Show c.104-1071_104-1070insAGAGGGAAGGAAGGAGAGAGGGAAGGAA GGAG	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773649	A A	AGGAAGGA others(25): Show AGGAAGGAAGGAGAGAAGGAAGGAAGGAGAGAG	intron_variant intron_variant	MODIFIER	NA19090.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0112 a0001c0001t0004g0112	1	295	0.0034	32	c.104 others(49): Show c.104-1036_104-1035insGGGAAGGAAGGAGAGAAGGAAGGAAGGA GAGA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773649	A A	AGGAAGGA others(25): Show AGGAAGGAAGGAGAGAGGGAAGGAAGGAGAGAG	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0279 a0001c0001t0029g0279	1	295	0.0034	32	c.104 others(49): Show c.104-1052_104-1051insGGGAAGGAAGGAGAGAGGGAAGGAAGGA GAGA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773665	A A	AGGAAGGA others(25): Show AGGAAGGAAGGAGAGAGGGAAGGAAGGAGAGAG	intron_variant intron_variant	MODIFIER	HG00323.hp2 NA18950.hp2 NA18981.hp2 HG00323.hp2 NA18950.hp2 NA18981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0226 a0001c0001t0001g0265 a0001c0001t0001g0041 a0001c0001t0001g0226 a0001c0001t0001g0265	3	300	0.0100	32	c.104 others(49): Show c.104-1036_104-1035insGGGAAGGAAGGAGAGAGGGAAGGAAGGA GAGA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2773758	C C	CGAAGGAA others(25): Show CGAAGGAAGGAAGGAGCGAAGGAAGGAAGGAGA	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0096 a0001c0001t0002g0096	1	200	0.0050	32	c.104 others(47): Show c.104-942_104-911dupCGAAGGAAGGAAGGAGAGAAGGAAGGAAGG AG	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
XG_chrX_2747040_2821500	2817166	G G	GGAAGGGA others(25): Show GGAAGGGAAGGAAGGAAGGAAGGAAGGAAGGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp1 HG01175.hp2 HG01257.hp2 others(22): Show HG01099.hp1 HG01175.hp2 HG01257.hp2 HG01258.hp2 HG01496.hp1 HG01496.hp2 HG01928.hp1 HG01943.hp1 HG02004.hp1 HG02015.hp1 HG02080.hp1 HG02080.hp2 HG02273.hp2 HG02293.hp2 HG03239.hp1 HG03831.hp1 HG04115.hp1 NA18959.hp1 NA18993.hp2 NA19009.hp1 NA19060.hp1 NA19070.hp1 NA19081.hp2 NA19083.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0016 a0001c0001t0002 a0001c0001t0006 a0001c0001t0016	a0001c0001t0002g0038 a0001c0001t0002g0083 a0001c0001t0002g0109 others(22): Show a0001c0001t0002g0038 a0001c0001t0002g0083 a0001c0001t0002g0109 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0170 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0180 a0001c0001t0002g0231 a0001c0001t0002g0248 a0001c0001t0002g0257 a0001c0001t0002g0272 a0001c0001t0002g0274 a0001c0001t0002g0291 a0001c0001t0002g0294 a0001c0001t0002g0300 a0001c0001t0006g0025 a0001c0001t0006g0061 a0001c0001t0006g0073 a0001c0001t0006g0080 a0001c0001t0006g0161 a0001c0001t0006g0162 a0001c0001t0006g0175 a0001c0001t0016g0277	25	177	0.1412	32	c.27 others(43): Show c.2786_*2787insGAAGGGAAGGAAGGAAGGAAGGAAGGAAGGAA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding		667		chrX	TogoVar
XKR3_chr22_16778480_16830411	16799413	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01071.hp2 HG01099.hp1 others(4): Show HG00408.hp1 HG01071.hp2 HG01099.hp1 HG02280.hp1 HG03239.hp1 NA18906.hp1 NA18987.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0002 a0002c0002t0002 a0002c0002t0003 others(1): Show a0001c0001t0002 a0002c0002t0002 a0002c0002t0003 a0003c0003t0001	a0001c0001t0002g0269 a0001c0001t0002g0310 a0001c0001t0002g0330 others(4): Show a0001c0001t0002g0269 a0001c0001t0002g0310 a0001c0001t0002g0330 a0002c0002t0002g0301 a0002c0002t0002g0302 a0002c0002t0003g0081 a0003c0003t0001g0107	7	90	0.0778	32	c.589 others(47): Show c.589+357_589+358insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	XKR3	ENSG00000172967.8	transcript	ENST00000684488.1	protein_coding	3/3			chr22	TogoVar
XKR4_chr8_55097028_55547054	55119268	T T	TACTGGGA others(25): Show TACTGGGAAGTCCCTCCCAGAAGAGACTCTCAG	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0146 a0001c0001t0146	a0001c0001t0146g0158 a0001c0001t0146g0158	1	182	0.0055	32	c.806 others(51): Show c.806+16004_806+16035dupCAGACTGGGAAGTCCCTCCCAGAAGA GACTCT	XKR4	ENSG00000206579.10	transcript	ENST00000327381.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
XKR4_chr8_55097028_55547054	55247835	T T	TTTTCTTT others(25): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02559.hp1 HG02922.hp2 HG01978.hp2 HG02559.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0048 a0001c0001t0155 a0001c0001t0027 a0001c0001t0048 a0001c0001t0155	a0001c0001t0027g0155 a0001c0001t0048g0061 a0001c0001t0155g0157 a0001c0001t0027g0155 a0001c0001t0048g0061 a0001c0001t0155g0157	3	162	0.0185	32	c.807 others(53): Show c.807-109820_807-109819insCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTT	XKR4	ENSG00000206579.10	transcript	ENST00000327381.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
XKR4_chr8_55097028_55547054	55247855	C C	CTTTCTTT others(25): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02970.hp1 HG00438.hp2 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0082 a0001c0001t0041 a0001c0001t0082	a0001c0001t0041g0172 a0001c0001t0082g0075 a0001c0001t0041g0172 a0001c0001t0082g0075	2	94	0.0213	32	c.807 others(53): Show c.807-109820_807-109819insCTTTCTTTCTTTCTTTCTTTCTTT CTTTTTTT	XKR4	ENSG00000206579.10	transcript	ENST00000327381.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
XKR6_chr8_10891045_11206833	10984732	C C	CTCTCTCT others(25): Show CTCTCTCTCTCTATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0134 a0001c0001t0012g0134	1	38	0.0263	32	c.765 others(51): Show c.765-59903_765-59902insTATATATATATATATATATATAGAGA GAGAGA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKR6_chr8_10891045_11206833	11178576	A A	ATATATAT others(25): Show ATATATATATATATATGTATATATATATATATG	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0115 a0001c0001t0007g0115	1	165	0.0061	32	c.764 others(51): Show c.764+21999_764+22000insCATATATATATATATACATATATATA TATATA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0138 a0001c0001t0001g0138	1	60	0.0167	32	c.605 others(49): Show c.605-2623_605-2592dupCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGAAAA others(25): Show AAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01891.hp1 HG01109.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0012 a0001c0001t0001g0002 a0001c0001t0001g0012	2	61	0.0328	32	c.605 others(49): Show c.605-2592_605-2591insCTTTCTTTCTTTCTTTCTTTCTTTCTTT TCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02559.hp1 HG02486.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0036 a0001c0001t0001g0128 a0001c0001t0001g0036 a0001c0001t0001g0128	2	61	0.0328	32	c.605 others(49): Show c.605-2592_605-2591insCTTTCTTTTCTTTCTTTCTTTCTTTCTT TCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGGAAA others(25): Show AAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	60	0.0167	32	c.605 others(49): Show c.605-2592_605-2591insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917722	G G	GAAAGAAA others(25): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAT	intron_variant intron_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	139	0.0072	32	c.605 others(49): Show c.605-2640_605-2639insATTTCTTTCTTTCTTTCTTTCTTTCTTT CTTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XPO6_chr16_28092976_28216965	28186371	A A	ATCCTTTT others(25): Show ATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0088 a0001c0001t0007g0088	1	305	0.0033	32	c.4-5 others(45): Show c.4-5341_4-5340insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA	XPO6	ENSG00000169180.12	transcript	ENST00000304658.10	protein_coding	1/23			chr16	TogoVar
XPO6_chr16_28092976_28216965	28186374	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02809.hp2 HG02922.hp2 others(1): Show HG02723.hp1 HG02809.hp2 HG02922.hp2 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0082 others(1): Show a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0007g0084	4	127	0.0315	32	c.4-5 others(45): Show c.4-5344_4-5343insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	XPO6	ENSG00000169180.12	transcript	ENST00000304658.10	protein_coding	1/23			chr16	TogoVar
XRCC1_chr19_43538311_43580527	43543341	C C	CGTGTGTG others(25): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp2 HG02970.hp2 HG01109.hp2 HG02970.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0009 a0007c0009t0009	a0007c0009t0009g0270 a0007c0009t0009g0272 a0007c0009t0009g0270 a0007c0009t0009g0272	2	160	0.0125	32	c.19 others(39): Show c.19_*50dupACACACACACACACACACACACACACACACAC	XRCC1	ENSG00000073050.12	transcript	ENST00000262887.10	protein_coding	17/17	50		chr19	TogoVar
XRCC2_chr7_152639776_152681141	152646301	G G	GGGGTGTG others(25): Show GGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18945.hp2 NA19066.hp1 NA18945.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0008 a0001c0001t0003g0089 a0001c0001t0003g0008 a0001c0001t0003g0089	2	34	0.0588	32	c.23 others(43): Show c.2340_*2341insACACACACACACACACACACACACACACACCC	XRCC2	ENSG00000196584.4	transcript	ENST00000359321.2	protein_coding	3/3	2340		chr7	TogoVar
XRCC2_chr7_152639776_152681141	152646301	G G	GGTGTGTG others(25): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02080.hp2 HG02129.hp2 HG02145.hp2 others(2): Show HG02080.hp2 HG02129.hp2 HG02145.hp2 HG02258.hp2 NA18984.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0003 a0001c0001t0011 a0003c0003t0039 a0001c0001t0003 a0001c0001t0011 a0003c0003t0039	a0001c0001t0003g0003 a0001c0001t0003g0007 a0001c0001t0003g0086 others(2): Show a0001c0001t0003g0003 a0001c0001t0003g0007 a0001c0001t0003g0086 a0001c0001t0011g0184 a0003c0003t0039g0067	5	37	0.1351	32	c.23 others(43): Show c.2340_*2341insACACACACACACACACACACACACACACACAC	XRCC2	ENSG00000196584.4	transcript	ENST00000359321.2	protein_coding	3/3	2340		chr7	TogoVar
XRCC4_chr5_83072547_83358760	83103009	G G	GATATATA others(25): Show GATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp2 HG02040.hp2 others(7): Show HG00408.hp1 HG00423.hp2 HG02040.hp2 HG02622.hp2 HG02818.hp1 NA18969.hp1 NA18970.hp1 NA18973.hp2 NA19009.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0060 others(7): Show a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0220 a0001c0002t0001g0014 a0001c0002t0001g0058 a0001c0002t0001g0059 a0001c0002t0001g0074	10	34	0.2941	32	c.-10 others(49): Show c.-10-1879_-10-1878insATATATATATATATATATATATATATAT ATAT	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC4_chr5_83072547_83358760	83217358	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	47	0.0213	32	c.745 others(51): Show c.745+12456_745+12457insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC5_chr2_216104348_216211293	216187821	A A	ACACACAC others(25): Show ACACACACACACACACACTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0150 a0001c0001t0002g0150	1	205	0.0049	32	c.183 others(51): Show c.1835-2403_1835-2402insACACACACACACACACTCTCTCTCTC TCTCTC	XRCC5	ENSG00000079246.16	transcript	ENST00000392132.7	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
XRCC5_chr2_216104348_216211293	216187821	A A	ACACACAC others(25): Show ACACACACACACACTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0016	1	205	0.0049	32	c.183 others(51): Show c.1835-2403_1835-2402insACACACACACACTCTCTCTCTCTCTC TCTCTC	XRCC5	ENSG00000079246.16	transcript	ENST00000392132.7	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
XRCC6_chr22_41616295_41669041	41649137	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01258.hp1 HG01257.hp2 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	2	287	0.0070	32	c.961 others(49): Show c.961-1585_961-1584insTATATATATATATATATATATATATATA TATA	XRCC6	ENSG00000196419.13	transcript	ENST00000360079.8	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
XRCC6_chr22_41616295_41669041	41649139	A A	AAAATATA others(25): Show AAAATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03225.hp2 NA18747.hp1 NA18962.hp2 HG03225.hp2 NA18747.hp1 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0068 a0001c0001t0001g0076 a0001c0001t0001g0272 a0001c0001t0001g0068 a0001c0001t0001g0076 a0001c0001t0001g0272	3	95	0.0316	32	c.961 others(49): Show c.961-1583_961-1582insAATATATATATATATATATATATATATA TATA	XRCC6	ENSG00000196419.13	transcript	ENST00000360079.8	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
XRCC6_chr22_41616295_41669041	41649139	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01106.hp1 HG01175.hp2 HG00738.hp2 HG01106.hp1 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0088 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0088	3	95	0.0316	32	c.961 others(49): Show c.961-1560_961-1559insATATATATATATATATATATATATATAT ATAT	XRCC6	ENSG00000196419.13	transcript	ENST00000360079.8	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
XRN1_chr3_142301610_142453037	142305926	G G	GACAGACA others(25): Show GACAGACATATATGTACAGACATATATGTACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02074.hp1 HG02083.hp2 HG02280.hp2 others(4): Show HG02074.hp1 HG02083.hp2 HG02280.hp2 HG02615.hp1 HG02647.hp2 HG03130.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0001c0001t0004 a0002c0002t0003 a0001c0001t0002 a0001c0001t0004 a0002c0002t0003	a0001c0001t0002g0150 a0001c0001t0002g0164 a0001c0001t0004g0289 others(4): Show a0001c0001t0002g0150 a0001c0001t0002g0164 a0001c0001t0004g0289 a0001c0001t0004g0290 a0001c0001t0004g0291 a0002c0002t0003g0224 a0002c0002t0003g0237	7	322	0.0217	32	c.55 others(43): Show c.5584_*5585insATGTACATATATGTCTGTACATATATGTCTGT	XRN1	ENSG00000114127.11	transcript	ENST00000392981.7	protein_coding		683		chr3	TogoVar
XRRA1_chr11_74835910_74954091	74943524	G G	GGTGTGTG others(25): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA18989.hp2 NA19070.hp2 NA18989.hp2 NA19070.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0229 a0002c0002t0002g0230 a0002c0002t0002g0229 a0002c0002t0002g0230	2	54	0.0370	32	c.-5+ others(47): Show c.-5+1462_-5+1493dupACACACACACACACACACACACACACACAC AC	XRRA1	ENSG00000166435.17	transcript	ENST00000684022.1	protein_coding	2/18			chr11	TogoVar
XYLB_chr3_38341785_38419985	38419578	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG03540.hp2 HG00323.hp2 HG03540.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0006 a0002c0002t0001 a0002c0002t0006	a0002c0002t0001g0056 a0002c0002t0006g0082 a0002c0002t0001g0056 a0002c0002t0006g0082	2	244	0.0082	32	c.65 others(43): Show c.6565_*6566insTATATATATATATATATATATATATATATATA	XYLB	ENSG00000093217.11	transcript	ENST00000207870.8	protein_coding		4594		chr3	TogoVar
XYLB_chr3_38341785_38419985	38419603	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp1 HG01123.hp2 HG01358.hp2 others(8): Show HG01099.hp1 HG01123.hp2 HG01358.hp2 HG02015.hp1 HG02273.hp1 HG02818.hp1 HG03491.hp1 HG03492.hp1 NA18946.hp1 NA18956.hp1 NA19009.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0006 a0001c0001 a0002c0002 a0005c0006	a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 a0002c0002t0004 a0005c0006t0001	a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0004g0001 others(8): Show a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0004g0001 a0001c0001t0004g0070 a0002c0002t0001g0018 a0002c0002t0001g0086 a0002c0002t0001g0281 a0002c0002t0004g0028 a0002c0002t0004g0039 a0002c0002t0004g0059 a0005c0006t0001g0320	11	226	0.0487	32	c.65 others(43): Show c.6590_*6591insATATATATATATATATATATATATATATATAA	XYLB	ENSG00000093217.11	transcript	ENST00000207870.8	protein_coding		4619		chr3	TogoVar
XYLT1_chr16_17096769_17475960	17098149	A A	ATGTGTGT others(25): Show ATGTGTGTATATGTGTATATACATATATATGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0051 a0001c0008t0051	a0001c0008t0051g0092 a0001c0008t0051g0092	1	153	0.0065	32	c.10 others(45): Show c.10545_*10546insCACATATATATGTATATACACATATACACACA	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding		3619		chr16	TogoVar
XYLT1_chr16_17096769_17475960	17197014	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG02300.hp2 HG01515.hp2 HG01517.hp1 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0028 a0001c0001t0050 a0001c0003t0006 a0001c0001t0028 a0001c0001t0050 a0001c0003t0006	a0001c0001t0028g0007 a0001c0001t0050g0051 a0001c0003t0006g0095 a0001c0001t0028g0007 a0001c0001t0050g0051 a0001c0003t0006g0095	3	102	0.0294	32	c.128 others(51): Show c.1289+1197_1289+1198insATATATATATATATATATATATATAT ATATAT	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	5/11			chr16	TogoVar
XYLT1_chr16_17096769_17475960	17327602	T T	TCCCCCCC others(25): Show TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0006 a0006	a0006c0012 a0006c0012	a0006c0012t0003 a0006c0012t0003	a0006c0012t0003g0024 a0006c0012t0003g0024	1	39	0.0256	32	c.402 others(51): Show c.402+30409_402+30410insGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGG	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	2/11			chr16	TogoVar
XYLT1_chr16_17096769_17475960	17377175	T T	TCACACAC others(25): Show TCACACACACACACACACACACACACACACACC	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG03195.hp2 others(1): Show HG02486.hp2 HG02630.hp2 HG03195.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0025 others(1): Show a0001c0001 a0001c0007 a0001c0025 a0001c0031	a0001c0001t0058 a0001c0007t0099 a0001c0025t0070 others(1): Show a0001c0001t0058 a0001c0007t0099 a0001c0025t0070 a0001c0031t0009	a0001c0001t0058g0098 a0001c0007t0099g0151 a0001c0025t0070g0112 others(1): Show a0001c0001t0058g0098 a0001c0007t0099g0151 a0001c0025t0070g0112 a0001c0031t0009g0001	4	115	0.0348	32	c.364 others(51): Show c.364-19126_364-19125insGGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTG	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	1/11			chr16	TogoVar
YAE1_chr7_39561404_39577881	39575577	A A	AGAGAGAG others(25): Show AGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04115.hp1 NA19010.hp2 NA19059.hp2 HG04115.hp1 NA19010.hp2 NA19059.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0025 a0001c0001t0001g0004 a0001c0001t0001g0025	3	413	0.0073	32	c.28 others(43): Show c.2871_*2872insGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGT	YAE1	ENSG00000241127.8	transcript	ENST00000223273.7	protein_coding		2697		chr7	TogoVar
YAF2_chr12_42152104_42243248	42165902	A A	ATCTATCT others(25): Show ATCTATCTATCTATCTATCTATCTATCTATCTG	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02809.hp2 NA19043.hp2 HG02280.hp2 HG02809.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0028 a0001c0001t0029 a0001c0001t0027 a0001c0001t0028 a0001c0001t0029	a0001c0001t0027g0090 a0001c0001t0028g0092 a0001c0001t0029g0091 a0001c0001t0027g0090 a0001c0001t0028g0092 a0001c0001t0029g0091	3	370	0.0081	32	c.153 others(49): Show c.153-4138_153-4137insCAGATAGATAGATAGATAGATAGATAGA TAGA	YAF2	ENSG00000015153.15	transcript	ENST00000534854.7	protein_coding	2/3			chr12	TogoVar
YAF2_chr12_42152104_42243248	42175740	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18949.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	9	0.1111	32	c.153 others(51): Show c.153-13976_153-13975insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	YAF2	ENSG00000015153.15	transcript	ENST00000534854.7	protein_coding	2/3			chr12	TogoVar
YAP1_chr11_102105447_102238424	102183702	C C	CTGTGTGT others(25): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0198 a0001c0001t0012g0198	1	136	0.0074	32	c.689 others(49): Show c.689-2310_689-2279dupGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGT	YAP1	ENSG00000137693.14	transcript	ENST00000282441.10	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
YBEY_chr21_46281342_46302751	46298434	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp2 HG02280.hp2 HG02300.hp1 others(9): Show HG00642.hp2 HG02280.hp2 HG02300.hp1 HG02559.hp1 HG02738.hp1 HG03017.hp1 NA18944.hp1 NA18968.hp2 NA18990.hp2 NA19060.hp1 NA19064.hp2 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0036 a0001c0001t0001g0037 others(9): Show a0001c0001t0001g0004 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0075 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0001g0116 a0001c0001t0001g0271	12	203	0.0591	32	c.80 others(41): Show c.800_*801insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	YBEY	ENSG00000182362.14	transcript	ENST00000397701.9	protein_coding		684		chr21	TogoVar
YEATS2_chr3_183692797_183817624	183802506	T T	TGTGTGTG others(25): Show TGTGTGTGTATACATGTATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03540.hp2 HG03579.hp2 HG03486.hp1 HG03540.hp2 HG03579.hp2	a0006 a0006	a0006c0011 a0006c0011	a0006c0011t0001 a0006c0011t0001	a0006c0011t0001g0032 a0006c0011t0001g0033 a0006c0011t0001g0059 a0006c0011t0001g0032 a0006c0011t0001g0033 a0006c0011t0001g0059	3	298	0.0101	32	c.350 others(49): Show c.3503-746_3503-745insGTGTATACATGTATATATATATATACAC GTGT	YEATS2	ENSG00000163872.16	transcript	ENST00000305135.10	protein_coding	25/30		INFO_REALIGN_3_PRIME	chr3	TogoVar
YJU2B_chr19_13742895_13768289	13767861	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18950.hp2 NA18950.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	134	0.0075	32	c.47 others(43): Show c.4793_*4794insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	YJU2B	ENSG00000104957.14	transcript	ENST00000221554.13	protein_coding		4573		chr19	TogoVar
YME1L1_chr10_27105111_27159384	27149711	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0257 a0001c0002t0004g0257	1	146	0.0068	32	c.34- others(45): Show c.34-672_34-671insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	YME1L1	ENSG00000136758.20	transcript	ENST00000376016.8	protein_coding	1/18			chr10	TogoVar
YPEL2_chr17_59326655_59406729	59405426	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0152 a0001c0001t0048g0152	1	272	0.0037	32	c.82 others(43): Show c.8236_*8237insTATATATATATATATATATATATATATATATA	YPEL2	ENSG00000175155.11	transcript	ENST00000312655.9	protein_coding		3698		chr17	TogoVar
YPEL2_chr17_59326655_59406729	59405456	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0230 a0001c0001t0006g0230	1	157	0.0064	32	c.82 others(43): Show c.8266_*8267insTATATATATATATATATATATATATATATATT	YPEL2	ENSG00000175155.11	transcript	ENST00000312655.9	protein_coding		3728		chr17	TogoVar

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