view | regionname | pos | ref | alt | annotation | impact | samples | ahapids | chapids | thapids | thapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SPRR5_chr1_152942206_152954255 | 152948232 | T | TTCTTC | intron_variant | MODIFIER | NA18971.hp1 NA18973.hp2 NA18990.hp1 others(3): Show |
a0007a0012 | a0007c0006a0012c0012 | a0007c0006t0006a0012c0012t0006 | a0007c0006t0006g0010 a0007c0006t0006g0011 a0012c0012t0006g0011 |
6 | 434 | 0.0138 | 5 | c.-18 others(20): Show |
SPRR5 | ENSG00000283227.2 | transcript | ENST00000636302.2 | protein_coding | 1/1 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
SPRR5_chr1_152942206_152954255 | 152949318 | T | TTGTTG | downstream_gene_variant | MODIFIER | HG01884.hp1 HG02109.hp2 HG02145.hp2 others(4): Show |
a0004 | a0004c0004 | a0004c0004t0005 | a0004c0004t0005g0008 a0004c0004t0005g0013 a0004c0004t0005g0020 |
7 | 434 | 0.0161 | 5 | c.*43 others(14): Show |
SPRR5 | ENSG00000283227.2 | transcript | ENST00000636302.2 | protein_coding | 64 | chr1 | TogoVar | |||||||
SPRY1_chr4_123391795_123408755 | 123392545 | C | CTTTTT | upstream_gene_variant | MODIFIER | HG01255.hp1 HG02074.hp1 HG02895.hp2 others(11): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(1): Show | a0001c0001t0001g0003 a0001c0001t0001g0034 a0001c0001t0003g0005 others(3): Show |
14 | 104 | 0.1346 | 5 | c.-46 others(16): Show |
SPRY1 | ENSG00000164056.11 | transcript | ENST00000651917.1 | protein_coding | 4249 | chr4 | TogoVar | |||||||
SPRY3_chrX_155607586_155787459 | 155680191 | T | TGTGTG | intron_variant | MODIFIER | HG01517.hp2 HG03516.hp1 |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0073 | a0001c0001t0001g0026 a0001c0001t0073g0014 |
2 | 214 | 0.0093 | 5 | c.-28 others(26): Show |
SPRY3 | ENSG00000168939.13 | transcript | ENST00000695325.1 | protein_coding | 1/2 | chrX | TogoVar | |||||||
SPRY3_chrX_155607586_155787459 | 155716596 | T | TTTTTG | intron_variant | MODIFIER | HG02451.hp1 HG03195.hp2 HG03579.hp1 |
a0001 | a0001c0001 | a0001c0001t0007a0001c0001t0039a0001c0001t0040 | a0001c0001t0007g0098 a0001c0001t0039g0097 a0001c0001t0040g0096 |
3 | 229 | 0.0131 | 5 | c.-28 others(26): Show |
SPRY3 | ENSG00000168939.13 | transcript | ENST00000695325.1 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chrX | TogoVar | ||||||
SPRY3_chrX_155607586_155787459 | 155751924 | G | GAAATA | intron_variant | MODIFIER | HG00423.hp1 HG00423.hp2 HG00544.hp1 others(31): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(26): Show | a0001c0001t0001g0145 a0001c0001t0001g0223 a0001c0001t0002g0125 others(31): Show |
34 | 61 | 0.5574 | 5 | c.-28 others(26): Show |
SPRY3 | ENSG00000168939.13 | transcript | ENST00000695325.1 | protein_coding | 1/2 | INFO_REALIGN_3_PRIME | chrX | TogoVar | ||||||
SPRYD7_chr13_49907702_49941340 | 49918414 | T | TTTTTC | intron_variant | MODIFIER | HG02451.hp2 HG02818.hp1 HG02965.hp2 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0003 | a0001c0001t0003g0012 a0001c0001t0003g0107 a0001c0001t0003g0132 |
7 | 378 | 0.0185 | 5 | c.493 others(22): Show |
SPRYD7 | ENSG00000123178.16 | transcript | ENST00000361840.8 | protein_coding | 4/4 | chr13 | TogoVar | |||||||
SPRYD7_chr13_49907702_49941340 | 49920249 | G | GCAAAA | intron_variant | MODIFIER | HG00408.hp2 HG00423.hp2 HG01433.hp1 others(37): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(2): Show | a0001c0001t0001g0151 a0001c0001t0002g0119 a0001c0001t0003g0006 others(20): Show |
40 | 313 | 0.1278 | 5 | c.493 others(22): Show |
SPRYD7 | ENSG00000123178.16 | transcript | ENST00000361840.8 | protein_coding | 4/4 | chr13 | TogoVar | |||||||
SPSB3_chr16_1771712_1787571 | 1771809 | G | GCCCCC | downstream_gene_variant | MODIFIER | HG00408.hp1 HG00558.hp1 HG00558.hp2 others(27): Show |
a0001a0004 | a0001c0001a0001c0002a0004c0014 | a0001c0001t0001a0001c0002t0001a0004c0014t0001 | a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0010 others(6): Show |
30 | 374 | 0.0802 | 5 | c.*52 others(16): Show |
SPSB3 | ENSG00000162032.16 | transcript | ENST00000566339.6 | protein_coding | 4902 | chr16 | TogoVar | |||||||
SPSB4_chr3_141046347_141153611 | 141112644 | C | CAAAAA | intron_variant | MODIFIER | HG00639.hp1 HG01891.hp2 HG02486.hp1 others(3): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0002a0001c0001t0010a0001c0001t0015others(1): Show | a0001c0001t0002g0056 a0001c0001t0002g0171 a0001c0001t0002g0172 others(3): Show |
6 | 103 | 0.0583 | 5 | c.695 others(24): Show |
SPSB4 | ENSG00000175093.5 | transcript | ENST00000310546.3 | protein_coding | 2/2 | INFO_REALIGN_3_PRIME | chr3 | TogoVar | ||||||
SPTAN1_chr9_128547587_128638662 | 128560084 | C | CTTTTT | intron_variant | MODIFIER | HG02055.hp1 HG02109.hp2 HG02486.hp2 others(9): Show |
a0001 | a0001c0002a0001c0022 | a0001c0002t0001a0001c0022t0001 | a0001c0002t0001g0003 a0001c0002t0001g0004 a0001c0002t0001g0005 others(9): Show |
12 | 26 | 0.4615 | 5 | c.-3- others(20): Show |
SPTAN1 | ENSG00000197694.19 | transcript | ENST00000372739.7 | protein_coding | 1/56 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SPTAN1_chr9_128547587_128638662 | 128561662 | C | CAAAAA | intron_variant | MODIFIER | HG00423.hp2 HG00438.hp1 HG00609.hp1 others(29): Show |
a0001a0002 | a0001c0002a0001c0021a0001c0024others(3): Show | a0001c0002t0001a0001c0021t0001a0001c0024t0001others(3): Show | a0001c0002t0001g0005 a0001c0002t0001g0174 a0001c0002t0001g0179 others(29): Show |
32 | 53 | 0.6038 | 5 | c.-3- others(20): Show |
SPTAN1 | ENSG00000197694.19 | transcript | ENST00000372739.7 | protein_coding | 1/56 | INFO_REALIGN_3_PRIME | chr9 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54457153 | G | GCCCCC | intron_variant | MODIFIER | HG00408.hp1 HG00438.hp1 HG00558.hp2 others(37): Show |
a0001a0004a0006others(1): Show | a0001c0001a0001c0002a0001c0003others(9): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0004others(19): Show | a0001c0001t0001g0082 a0001c0001t0002g0007 a0001c0001t0002g0078 others(37): Show |
40 | 111 | 0.3604 | 5 | c.-48 others(20): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54471800 | A | ATTTTT | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp2 HG00280.hp1 others(38): Show |
a0001a0009 | a0001c0001a0001c0002a0001c0003others(9): Show | a0001c0001t0002a0001c0001t0010a0001c0002t0001others(18): Show | a0001c0001t0002g0351 a0001c0001t0010g0238 a0001c0002t0001g0231 others(38): Show |
41 | 47 | 0.8723 | 5 | c.-48 others(24): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54472022 | G | GTTTTT | intron_variant | MODIFIER | HG01167.hp2 HG01255.hp2 HG02451.hp2 others(10): Show |
a0001 | a0001c0001a0001c0002a0001c0005 | a0001c0001t0003a0001c0002t0001a0001c0005t0008others(1): Show | a0001c0001t0003g0059 a0001c0001t0003g0060 a0001c0001t0003g0061 others(10): Show |
13 | 67 | 0.1940 | 5 | c.-48 others(24): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 1/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54530353 | C | CTTTTT | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp2 HG00280.hp1 others(31): Show |
a0001a0003a0009 | a0001c0002a0001c0003a0001c0011others(2): Show | a0001c0002t0001a0001c0002t0004a0001c0002t0028others(11): Show | a0001c0002t0001g0331 a0001c0002t0004g0101 a0001c0002t0028g0295 others(31): Show |
34 | 98 | 0.3469 | 5 | c.148 others(22): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54553538 | C | CTGTGG | intron_variant | MODIFIER | HG00738.hp1 HG02257.hp2 HG02280.hp1 others(2): Show |
a0001 | a0001c0001a0001c0008 | a0001c0001t0019a0001c0001t0050a0001c0008t0026 | a0001c0001t0019g0031 a0001c0001t0019g0185 a0001c0001t0019g0241 others(2): Show |
5 | 368 | 0.0136 | 5 | c.148 others(24): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54576055 | C | CTTTTT | intron_variant | MODIFIER | HG00099.hp1 HG00140.hp2 HG00280.hp1 others(51): Show |
a0001a0002a0003others(1): Show | a0001c0001a0001c0003a0001c0009others(5): Show | a0001c0001t0003a0001c0001t0007a0001c0001t0044others(13): Show | a0001c0001t0003g0059 a0001c0001t0003g0060 a0001c0001t0003g0061 others(51): Show |
54 | 182 | 0.2967 | 5 | c.149 others(24): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54581577 | C | CTTTTT | intron_variant | MODIFIER | HG00738.hp1 HG01346.hp2 HG02055.hp1 others(14): Show |
a0001 | a0001c0001a0001c0005a0001c0008others(1): Show | a0001c0001t0018a0001c0001t0019a0001c0001t0050others(5): Show | a0001c0001t0018g0189 a0001c0001t0018g0303 a0001c0001t0019g0031 others(14): Show |
17 | 79 | 0.2152 | 5 | c.149 others(24): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54642529 | G | GTTTGT | intron_variant | MODIFIER | HG02602.hp1 HG02895.hp2 HG03225.hp1 others(11): Show |
a0001a0002a0010 | a0001c0012a0002c0006a0010c0032 | a0001c0012t0016a0002c0006t0003a0010c0032t0004 | a0001c0012t0016g0026 a0001c0012t0016g0135 a0001c0012t0016g0181 others(11): Show |
14 | 319 | 0.0439 | 5 | c.385 others(22): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 18/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN1_chr2_54451327_54676446 | 54642529 | G | GTTTTT | intron_variant | MODIFIER | HG00738.hp1 HG02280.hp1 HG02280.hp2 others(3): Show |
a0001 | a0001c0001a0001c0012 | a0001c0001t0010a0001c0001t0019a0001c0001t0050others(1): Show | a0001c0001t0010g0238 a0001c0001t0019g0031 a0001c0001t0019g0185 others(3): Show |
6 | 311 | 0.0193 | 5 | c.385 others(22): Show |
SPTBN1 | ENSG00000115306.17 | transcript | ENST00000356805.9 | protein_coding | 18/35 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40473354 | G | GTTTTT | intron_variant | MODIFIER | HG00741.hp2 HG01891.hp1 HG01891.hp2 others(3): Show |
a0004a0005a0008others(1): Show | a0004c0007a0005c0009a0008c0013others(1): Show | a0004c0007t0003a0005c0009t0001a0008c0013t0001others(1): Show | a0004c0007t0003g0002 a0005c0009t0001g0001 a0005c0009t0001g0148 others(3): Show |
6 | 150 | 0.0400 | 5 | c.169 others(20): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 2/35 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40491713 | C | CAAAAA | intron_variant | MODIFIER | HG01109.hp2 HG01257.hp2 HG02040.hp2 others(15): Show |
a0001a0002a0003others(3): Show | a0001c0001a0001c0002a0001c0008others(6): Show | a0001c0001t0001a0001c0002t0001a0001c0002t0005others(8): Show | a0001c0001t0001g0203 a0001c0002t0001g0022 a0001c0002t0005g0193 others(15): Show |
18 | 108 | 0.1667 | 5 | c.496 others(22): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 4/35 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40544440 | C | CTTTTT | intron_variant | MODIFIER | HG01070.hp2 HG01123.hp1 HG02055.hp1 others(3): Show |
a0002a0003a0004others(2): Show | a0002c0004a0003c0005a0004c0011others(2): Show | a0002c0004t0001a0003c0005t0001a0004c0011t0001others(2): Show | a0002c0004t0001g0050 a0003c0005t0001g0211 a0004c0011t0001g0137 others(3): Show |
6 | 72 | 0.0833 | 5 | c.436 others(24): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 20/35 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
SPTBN4_chr19_40462001_40581464 | 40565271 | A | AAAAAG | intron_variant | MODIFIER | HG00621.hp1 HG00741.hp1 HG01074.hp2 others(17): Show |
a0001a0004a0016 | a0001c0001a0001c0038a0004c0007others(1): Show | a0001c0001t0001a0001c0038t0001a0004c0007t0001others(1): Show | a0001c0001t0001g0028 a0001c0001t0001g0038 a0001c0001t0001g0039 others(17): Show |
20 | 206 | 0.0971 | 5 | c.591 others(22): Show |
SPTBN4 | ENSG00000160460.17 | transcript | ENST00000598249.6 | protein_coding | 27/35 | INFO_REALIGN_3_PRIME | chr19 | TogoVar | ||||||
SPTBN5_chr15_41843146_41899053 | 41851581 | T | TGGCGG | intron_variant | MODIFIER | HG00140.hp2 HG00609.hp2 HG00639.hp1 others(59): Show |
a0003a0006a0008others(20): Show | a0003c0003a0003c0120a0006c0010others(22): Show | a0003c0003t0002a0003c0120t0002a0006c0010t0002others(22): Show | a0003c0003t0002g0007 a0003c0003t0002g0020 a0003c0003t0002g0021 others(50): Show |
62 | 224 | 0.2768 | 5 | c.106 others(24): Show |
SPTBN5 | ENSG00000137877.10 | transcript | ENST00000320955.8 | protein_coding | 63/67 | chr15 | TogoVar | |||||||
SPTBN5_chr15_41843146_41899053 | 41893099 | G | GCCCAT | intron_variant | MODIFIER | HG00609.hp2 HG01109.hp2 HG01192.hp1 others(36): Show |
a0005a0006a0044others(14): Show | a0005c0005a0005c0155a0006c0010others(17): Show | a0005c0005t0001a0005c0005t0007a0005c0005t0009others(19): Show | a0005c0005t0001g0005 a0005c0005t0001g0013 a0005c0005t0001g0050 others(32): Show |
39 | 394 | 0.0990 | 5 | c.217 others(18): Show |
SPTBN5 | ENSG00000137877.10 | transcript | ENST00000320955.8 | protein_coding | 2/67 | chr15 | TogoVar | |||||||
SPTB_chr14_64741283_64884907 | 64752288 | C | CCTCCT | intron_variant | MODIFIER | HG00438.hp1 HG00597.hp1 NA19007.hp2 |
a0001a0004 | a0001c0001a0004c0008 | a0001c0001t0001a0004c0008t0001 | a0001c0001t0001g0226 a0004c0008t0001g0036 a0004c0008t0001g0097 |
3 | 266 | 0.0113 | 5 | c.660 others(24): Show |
SPTB | ENSG00000070182.21 | transcript | ENST00000644917.1 | protein_coding | 33/35 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77513016 | C | CTTTTT | intron_variant | MODIFIER | HG00733.hp1 HG00733.hp2 HG01069.hp2 others(13): Show |
a0001 | a0001c0001a0001c0002a0001c0005 | a0001c0001t0001a0001c0001t0003a0001c0001t0009others(5): Show | a0001c0001t0001g0058 a0001c0001t0001g0139 a0001c0001t0001g0165 others(13): Show |
16 | 42 | 0.3810 | 5 | c.157 others(22): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 11/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77518596 | C | CAAAAA | intron_variant | MODIFIER | HG00099.hp1 HG00735.hp2 HG00741.hp1 others(40): Show |
a0001 | a0001c0001a0001c0002a0001c0003others(1): Show | a0001c0001t0005a0001c0001t0006a0001c0001t0008others(12): Show | a0001c0001t0005g0045 a0001c0001t0005g0073 a0001c0001t0005g0127 others(40): Show |
43 | 66 | 0.6515 | 5 | c.144 others(22): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 10/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77550594 | G | GGAAAA | intron_variant | MODIFIER | HG01081.hp2 HG01109.hp1 HG01168.hp2 others(33): Show |
a0001 | a0001c0001a0001c0002a0001c0004others(1): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(18): Show | a0001c0001t0001g0041 a0001c0001t0002g0070 a0001c0001t0003g0014 others(33): Show |
36 | 244 | 0.1475 | 5 | c.130 others(24): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 9/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77553729 | C | CAAAAA | intron_variant | MODIFIER | HG00558.hp1 HG00733.hp1 HG01069.hp2 others(25): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(3): Show | a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0031 others(25): Show |
28 | 68 | 0.4118 | 5 | c.117 others(24): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 8/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77569793 | T | TATATA | intron_variant | MODIFIER | HG02451.hp2 HG02572.hp2 HG02622.hp1 others(4): Show |
a0001 | a0001c0003a0001c0009 | a0001c0003t0001a0001c0003t0017a0001c0003t0023others(1): Show | a0001c0003t0001g0011 a0001c0003t0001g0012 a0001c0003t0001g0013 others(4): Show |
7 | 244 | 0.0287 | 5 | c.756 others(20): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 5/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77581405 | C | CTTTTT | intron_variant | MODIFIER | HG00323.hp2 HG00408.hp1 HG01255.hp2 others(14): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(4): Show | a0001c0001t0001g0115 a0001c0001t0001g0119 a0001c0001t0001g0120 others(14): Show |
17 | 99 | 0.1717 | 5 | c.328 others(22): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 2/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77610137 | G | GGTTTT | intron_variant | MODIFIER | HG00280.hp2 HG00323.hp2 HG00408.hp1 others(66): Show |
a0001 | a0001c0001a0001c0002a0001c0003others(5): Show | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(24): Show | a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0107 others(66): Show |
69 | 147 | 0.4694 | 5 | c.132 others(22): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 1/11 | chr14 | TogoVar | |||||||
SPTLC2_chr14_77500997_77621637 | 77620882 | T | TTTTTC | upstream_gene_variant | MODIFIER | HG01255.hp2 HG03486.hp1 NA21309.hp2 |
a0001 | a0001c0002 | a0001c0002t0005a0001c0002t0006 | a0001c0002t0005g0075 a0001c0002t0005g0076 a0001c0002t0006g0104 |
3 | 188 | 0.0160 | 5 | c.-43 others(16): Show |
SPTLC2 | ENSG00000100596.8 | transcript | ENST00000216484.7 | protein_coding | 4246 | chr14 | TogoVar | |||||||
SPTLC3_chr20_13003972_13174103 | 13020355 | A | AAAAAG | intron_variant | MODIFIER | HG00140.hp1 HG00140.hp2 HG00280.hp1 others(136): Show |
a0001a0002a0003others(3): Show | a0001c0001a0001c0003a0001c0004others(10): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(55): Show | a0001c0001t0001g0052 a0001c0001t0001g0093 a0001c0001t0001g0097 others(136): Show |
139 | 288 | 0.4826 | 5 | c.117 others(24): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 1/11 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SPTLC3_chr20_13003972_13174103 | 13088784 | A | ATTTTT | intron_variant | MODIFIER | HG00673.hp2 NA18946.hp2 NA18959.hp1 others(3): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0001t0008a0001c0003t0010 | a0001c0001t0001g0097 a0001c0001t0001g0134 a0001c0001t0001g0144 others(3): Show |
6 | 8 | 0.7500 | 5 | c.608 others(22): Show |
SPTLC3 | ENSG00000172296.13 | transcript | ENST00000399002.7 | protein_coding | 4/11 | INFO_REALIGN_3_PRIME | chr20 | TogoVar | ||||||
SPTSSA_chr14_34427788_34467240 | 34459484 | G | GAAAAT | intron_variant | MODIFIER | HG00140.hp2 HG00280.hp2 HG00408.hp2 others(81): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(5): Show | a0001c0001t0001g0116 a0001c0001t0001g0120 a0001c0001t0001g0123 others(77): Show |
84 | 342 | 0.2456 | 5 | c.112 others(22): Show |
SPTSSA | ENSG00000165389.7 | transcript | ENST00000298130.5 | protein_coding | 1/1 | chr14 | TogoVar | |||||||
SPTSSB_chr3_161339798_161376517 | 161348251 | G | GCAAAA | intron_variant | MODIFIER | HG00408.hp1 HG00597.hp1 HG01169.hp1 others(25): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0002a0001c0001t0003others(3): Show | a0001c0001t0001g0138 a0001c0001t0001g0180 a0001c0001t0001g0190 others(22): Show |
28 | 168 | 0.1667 | 5 | c.-32 others(22): Show |
SPTSSB | ENSG00000196542.9 | transcript | ENST00000620149.2 | protein_coding | 2/2 | chr3 | TogoVar | |||||||
SPTY2D1_chr11_18601403_18639342 | 18621323 | C | CAGAAA | intron_variant | MODIFIER | HG00639.hp1 HG01106.hp2 HG01257.hp2 others(14): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(3): Show | a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0206 others(14): Show |
17 | 87 | 0.1954 | 5 | c.61- others(20): Show |
SPTY2D1 | ENSG00000179119.15 | transcript | ENST00000336349.6 | protein_coding | 1/5 | chr11 | TogoVar | |||||||
SPTY2D1_chr11_18601403_18639342 | 18635669 | C | CAAAAA | upstream_gene_variant | MODIFIER | HG00099.hp1 HG00099.hp2 HG00140.hp1 others(171): Show |
a0001a0004a0006others(2): Show | a0001c0001a0001c0002a0001c0005others(5): Show | a0001c0001t0001a0001c0001t0006a0001c0001t0017others(14): Show | a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0010 others(137): Show |
174 | 380 | 0.4579 | 5 | c.-14 others(16): Show |
SPTY2D1 | ENSG00000179119.15 | transcript | ENST00000336349.6 | protein_coding | 1328 | chr11 | TogoVar | |||||||
SPZ1_chr5_80315002_80326842 | 80317566 | C | CTTTTT | upstream_gene_variant | MODIFIER | HG01255.hp1 HG01993.hp1 HG02683.hp2 others(5): Show |
a0001a0006a0007others(1): Show | a0001c0001a0006c0006a0007c0015others(2): Show | a0001c0001t0001a0001c0001t0003a0006c0006t0002others(3): Show | a0001c0001t0001g0000 a0001c0001t0003g0000 a0006c0006t0002g0000 others(3): Show |
8 | 73 | 0.1096 | 5 | c.-26 others(16): Show |
SPZ1 | ENSG00000164299.7 | transcript | ENST00000296739.6 | protein_coding | 2435 | chr5 | TogoVar | |||||||
SQLE_chr8_124993505_125027283 | 125003888 | T | TGGTGG | intron_variant | MODIFIER | HG01884.hp2 HG01891.hp1 HG02055.hp1 others(11): Show |
a0001 | a0001c0003 | a0001c0003t0001 | a0001c0003t0001g0014 a0001c0003t0001g0018 a0001c0003t0001g0027 others(5): Show |
14 | 376 | 0.0372 | 5 | c.544 others(20): Show |
SQLE | ENSG00000104549.12 | transcript | ENST00000265896.10 | protein_coding | 2/10 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | ||||||
SQOR_chr15_45630029_45696281 | 45661289 | T | TAAAAA | intron_variant | MODIFIER | HG03669.hp2 HG06807.hp2 NA18944.hp1 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0046 a0001c0001t0001g0210 a0001c0001t0001g0261 others(1): Show |
4 | 124 | 0.0323 | 5 | c.235 others(20): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 2/9 | chr15 | TogoVar | |||||||
SQOR_chr15_45630029_45696281 | 45661289 | T | TAGAAA | intron_variant | MODIFIER | HG01099.hp2 HG01346.hp2 HG02738.hp1 others(6): Show |
a0001a0002 | a0001c0001a0002c0002 | a0001c0001t0001a0002c0002t0001a0002c0002t0005 | a0001c0001t0001g0127 a0001c0001t0001g0175 a0001c0001t0001g0192 others(6): Show |
9 | 129 | 0.0698 | 5 | c.235 others(20): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 2/9 | chr15 | TogoVar | |||||||
SQOR_chr15_45630029_45696281 | 45666856 | T | TCTCCC | intron_variant | MODIFIER | HG00099.hp2 HG00323.hp1 HG01081.hp2 others(16): Show |
a0001 | a0001c0001a0001c0003 | a0001c0001t0001a0001c0001t0004a0001c0003t0001 | a0001c0001t0001g0003 a0001c0001t0001g0027 a0001c0001t0001g0043 others(15): Show |
19 | 241 | 0.0788 | 5 | c.406 others(22): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 3/9 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
SQOR_chr15_45630029_45696281 | 45690664 | T | TCCTGA | intron_variant | MODIFIER | HG00099.hp2 HG00323.hp1 HG00558.hp1 others(67): Show |
a0001a0002a0004others(4): Show | a0001c0001a0001c0003a0001c0013others(7): Show | a0001c0001t0001a0001c0001t0002a0001c0001t0007others(9): Show | a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 others(66): Show |
70 | 338 | 0.2071 | 5 | c.129 others(22): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 9/9 | INFO_REALIGN_3_PRIME | chr15 | TogoVar | ||||||
SQOR_chr15_45630029_45696281 | 45694121 | A | ATTAAC | downstream_gene_variant | MODIFIER | HG00735.hp2 HG00738.hp2 HG01070.hp2 others(26): Show |
a0001a0002 | a0001c0001a0002c0002a0002c0004 | a0001c0001t0001a0001c0001t0003a0001c0001t0004others(2): Show | a0001c0001t0001g0023 a0001c0001t0001g0034 a0001c0001t0001g0062 others(26): Show |
29 | 289 | 0.1003 | 5 | c.*30 others(16): Show |
SQOR | ENSG00000137767.14 | transcript | ENST00000260324.12 | protein_coding | 2841 | chr15 | TogoVar | |||||||
SQSTM1_chr5_179815905_179843078 | 179818012 | C | CAAAAA | upstream_gene_variant | MODIFIER | HG01256.hp1 HG01256.hp2 HG01258.hp2 others(4): Show |
a0001 | a0001c0001 | a0001c0001t0001a0001c0001t0012 | a0001c0001t0001g0009 a0001c0001t0001g0059 a0001c0001t0001g0245 others(3): Show |
7 | 145 | 0.0483 | 5 | c.-29 others(16): Show |
SQSTM1 | ENSG00000161011.20 | transcript | ENST00000389805.9 | protein_coding | 2892 | chr5 | TogoVar |