Joint Open Genome and Omics Platform (JoGo)

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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

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Snpeff haplotype class

Snpeff annotation impact

Snpeff annotation impact detail

Hapid

Enter haplotype IDs (e.g., a1c1t1g1, a1c1, a1) separated by commas <= a0001 (zero padding also accept)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GPC5_chr13_91393621_92872237	92424811	T T	TATTCATT others(1): Show TATTCATTC	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02809.hp2 HG03579.hp2 HG02280.hp2 HG02809.hp2 HG03579.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0004 a0003c0003t0002 a0001c0001t0001 a0002c0002t0004 a0003c0003t0002	a0001c0001t0001g0027 a0002c0002t0004g0026 a0003c0003t0002g0016 a0001c0001t0001g0027 a0002c0002t0004g0026 a0003c0003t0002g0016	3	42	0.0714	8	c.156 others(31): Show c.1561+279850_1561+279857dupCATTCATT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92525437	A A	AGTGTGTG others(1): Show AGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG03486.hp2 HG02615.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0034 a0001c0001t0002g0036 a0001c0001t0002g0034 a0001c0001t0002g0036	2	42	0.0476	8	c.156 others(31): Show c.1562-340809_1562-340802dupTGTGTGTG	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92549884	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02280.hp1 HG02622.hp1 others(4): Show HG02145.hp1 HG02280.hp1 HG02622.hp1 HG03471.hp1 HG03540.hp1 HG03579.hp1 NA19043.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0004 a0002c0002 others(1): Show a0001c0001 a0001c0004 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 a0002c0002t0002 a0003c0003t0001	a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0032 others(4): Show a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0001g0032 a0001c0001t0002g0014 a0001c0004t0001g0017 a0002c0002t0002g0015 a0003c0003t0001g0010	7	42	0.1667	8	c.156 others(31): Show c.1562-316368_1562-316361dupCACACACA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92577412	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03579.hp1 NA19043.hp2 HG03540.hp1 HG03579.hp1 NA19043.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0002 a0002c0002t0002 a0003c0003t0001 a0001c0001t0002 a0002c0002t0002 a0003c0003t0001	a0001c0001t0002g0014 a0002c0002t0002g0015 a0003c0003t0001g0010 a0001c0001t0002g0014 a0002c0002t0002g0015 a0003c0003t0001g0010	3	42	0.0714	8	c.156 others(31): Show c.1562-288867_1562-288866insGTGTGTGT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92577418	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02615.hp2 HG02897.hp2 HG02258.hp2 HG02615.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0007 a0001c0001t0001g0025 a0001c0001t0002g0034 a0001c0001t0001g0007 a0001c0001t0001g0025 a0001c0001t0002g0034	3	42	0.0714	8	c.156 others(31): Show c.1562-288838_1562-288831dupGTGTGTGT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92579242	T T	TCTCCCTC others(1): Show TCTCCCTCC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02922.hp1 HG03041.hp1 others(2): Show HG02809.hp1 HG02922.hp1 HG03041.hp1 HG03540.hp2 HG03579.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0003c0003t0002 a0001c0001t0001 a0002c0002t0001 a0003c0003t0002	a0001c0001t0001g0021 a0001c0001t0001g0031 a0001c0001t0001g0033 others(2): Show a0001c0001t0001g0021 a0001c0001t0001g0031 a0001c0001t0001g0033 a0002c0002t0001g0008 a0003c0003t0002g0016	5	42	0.1191	8	c.156 others(31): Show c.1562-287012_1562-287005dupCCTCCCTC	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92632461	C C	CATATATA others(1): Show CATATATAT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03041.hp2 HG06807.hp2 HG01891.hp2 HG03041.hp2 HG06807.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0002c0002t0002 a0001c0001t0001 a0001c0001t0002 a0002c0002t0002	a0001c0001t0001g0018 a0001c0001t0002g0039 a0002c0002t0002g0038 a0001c0001t0001g0018 a0001c0001t0002g0039 a0002c0002t0002g0038	3	42	0.0714	8	c.156 others(31): Show c.1562-233820_1562-233819insTATATATA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92655297	T T	TTTTATTT others(1): Show TTTTATTTA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01261.hp1 HG02896.hp1 others(3): Show HG01109.hp2 HG01261.hp1 HG02896.hp1 HG02897.hp1 HG03041.hp2 HG06807.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0002c0002t0002	a0001c0001t0001g0006 a0001c0001t0001g0013 a0001c0001t0001g0023 others(3): Show a0001c0001t0001g0006 a0001c0001t0001g0013 a0001c0001t0001g0023 a0001c0001t0002g0039 a0001c0001t0003g0004 a0002c0002t0002g0038	6	42	0.1429	8	c.156 others(31): Show c.1562-210957_1562-210950dupATTTATTT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92685087	C C	CTATTTAT others(1): Show CTATTTATT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02615.hp2 HG02622.hp1 others(3): Show HG01891.hp1 HG02615.hp2 HG02622.hp1 HG02922.hp2 HG03453.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 a0001c0001t0001 a0001c0001t0002 a0001c0004t0001	a0001c0001t0001g0012 a0001c0001t0001g0022 a0001c0001t0002g0009 others(3): Show a0001c0001t0001g0012 a0001c0001t0001g0022 a0001c0001t0002g0009 a0001c0001t0002g0034 a0001c0001t0002g0041 a0001c0004t0001g0017	6	42	0.1429	8	c.156 others(31): Show c.1562-181181_1562-181174dupATTTATTT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92787667	C C	CAAAAAAA others(1): Show CAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02896.hp1 HG02897.hp1 others(2): Show HG02615.hp1 HG02896.hp1 HG02897.hp1 HG03239.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0020 others(2): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0003g0002	5	42	0.1191	8	c.156 others(29): Show c.1562-78606_1562-78599dupAAAAAAAA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92797819	T T	TGATAGAT others(1): Show TGATAGATA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02615.hp1 HG03041.hp1 others(1): Show HG02258.hp1 HG02615.hp1 HG03041.hp1 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0011 a0001c0001t0001g0021 a0001c0001t0001g0029 others(1): Show a0001c0001t0001g0011 a0001c0001t0001g0021 a0001c0001t0001g0029 a0001c0001t0003g0002	4	42	0.0952	8	c.156 others(29): Show c.1562-68419_1562-68412dupAGATAGAT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92862626	C C	CAGATAGA others(1): Show CAGATAGAT	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03486.hp2 HG03239.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0036 a0001c0001t0003g0003 a0001c0001t0002g0036 a0001c0001t0003g0003	2	42	0.0476	8	c.156 others(27): Show c.1562-3619_1562-3612dupAGATAGAT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93324587	C C	CATATATA others(1): Show CATATATAT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03098.hp1 HG03041.hp2 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0020 a0001c0001t0008 a0001c0001t0020	a0001c0001t0008g0060 a0001c0001t0020g0061 a0001c0001t0008g0060 a0001c0001t0020g0061	2	76	0.0263	8	c.160 others(27): Show c.160+96989_160+96996dupTATATATA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93368390	G G	GTCCTTCC others(1): Show GTCCTTCCT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03540.hp2 HG03453.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0037 a0001c0001t0001g0009 a0001c0001t0001g0037	2	76	0.0263	8	c.160 others(29): Show c.160+140794_160+140801dupTTCCTTCC	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93393107	G G	GATATATA others(1): Show GATATATAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03225.hp2 HG03471.hp2 others(2): Show HG02647.hp1 HG03225.hp2 HG03471.hp2 HG03486.hp1 NA19012.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0001t0005 a0001c0001t0024 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0024 a0001c0003t0011 a0002c0002t0008	a0001c0001t0001g0029 a0001c0001t0005g0050 a0001c0001t0024g0014 others(2): Show a0001c0001t0001g0029 a0001c0001t0005g0050 a0001c0001t0024g0014 a0001c0003t0011g0015 a0002c0002t0008g0023	5	76	0.0658	8	c.161 others(29): Show c.161-152142_161-152135dupTATATATA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93393127	T T	TATATATA others(1): Show TATATATAG	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG03017.hp1 HG03209.hp2 others(1): Show HG01975.hp1 HG03017.hp1 HG03209.hp2 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0021 a0002c0002t0033 a0001c0001t0001 a0001c0001t0021 a0002c0002t0033	a0001c0001t0001g0026 a0001c0001t0001g0075 a0001c0001t0021g0053 others(1): Show a0001c0001t0001g0026 a0001c0001t0001g0075 a0001c0001t0021g0053 a0002c0002t0033g0041	4	76	0.0526	8	c.161 others(29): Show c.161-152135_161-152134insTATATAGA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93444172	T T	TAAAAAGT others(1): Show TAAAAAGTC	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG02970.hp2 HG01975.hp1 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0034 a0001c0001t0001 a0001c0001t0034	a0001c0001t0001g0026 a0001c0001t0034g0076 a0001c0001t0001g0026 a0001c0001t0034g0076	2	76	0.0263	8	c.161 others(29): Show c.161-101086_161-101079dupAGTCAAAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93499091	T T	TCACACAC others(1): Show TCACACACA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01981.hp2 HG02055.hp1 others(7): Show HG00558.hp1 HG01981.hp2 HG02055.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp1 HG03225.hp2 HG03453.hp1 HG03471.hp2 NA19012.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 others(7): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 a0001c0001t0020 a0001c0001t0023 a0001c0001t0024 a0001c0003t0011 a0002c0002t0002 a0002c0002t0008 a0002c0002t0028	a0001c0001t0003g0065 a0001c0001t0006g0025 a0001c0001t0008g0060 others(7): Show a0001c0001t0003g0065 a0001c0001t0006g0025 a0001c0001t0008g0060 a0001c0001t0020g0061 a0001c0001t0023g0013 a0001c0001t0024g0014 a0001c0003t0011g0015 a0002c0002t0002g0008 a0002c0002t0008g0023 a0002c0002t0028g0004	10	76	0.1316	8	c.161 others(27): Show c.161-46151_161-46144dupCACACACA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93499106	C C	CACACACA others(1): Show CACACACAA	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02258.hp1 HG02615.hp2 HG01074.hp2 HG02258.hp1 HG02615.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0002 a0001c0003 a0002c0002	a0001c0003t0026 a0002c0002t0002 a0002c0002t0014 a0001c0003t0026 a0002c0002t0002 a0002c0002t0014	a0001c0003t0026g0006 a0002c0002t0002g0064 a0002c0002t0014g0022 a0001c0003t0026g0006 a0002c0002t0002g0064 a0002c0002t0014g0022	3	76	0.0395	8	c.161 others(27): Show c.161-46150_161-46149insAACACACA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93612500	A A	AACACACA others(1): Show AACACACAC	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02886.hp1 HG02895.hp1 others(4): Show HG02647.hp1 HG02886.hp1 HG02895.hp1 HG03453.hp2 HG03540.hp2 HG03579.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 others(3): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0016 a0001c0001t0025	a0001c0001t0001g0009 a0001c0001t0001g0037 a0001c0001t0005g0050 others(4): Show a0001c0001t0001g0009 a0001c0001t0001g0037 a0001c0001t0005g0050 a0001c0001t0010g0051 a0001c0001t0011g0010 a0001c0001t0016g0035 a0001c0001t0025g0066	7	76	0.0921	8	c.319 others(27): Show c.319+67115_319+67122dupCACACACA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93693461	C C	CTGTGTGT others(1): Show CTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02970.hp1 HG02451.hp2 HG02970.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0003 a0001c0001t0001 a0003c0004t0003	a0001c0001t0001g0019 a0003c0004t0003g0058 a0001c0001t0001g0019 a0003c0004t0003g0058	2	76	0.0263	8	c.320 others(29): Show c.320-136659_320-136652dupGTGTGTGT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93788518	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA21309.hp1 HG01884.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0018 a0001c0001t0016g0035 a0001c0001t0016g0018 a0001c0001t0016g0035	2	76	0.0263	8	c.320 others(27): Show c.320-41617_320-41610dupACACACAC	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93789598	C C	CATATATA others(1): Show CATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp1 NA20752.hp2 HG00558.hp1 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0017 a0002c0002t0028 a0001c0001t0017 a0002c0002t0028	a0001c0001t0017g0056 a0002c0002t0028g0004 a0001c0001t0017g0056 a0002c0002t0028g0004	2	76	0.0263	8	c.320 others(27): Show c.320-40516_320-40509dupTATATATA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93895222	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03579.hp1 NA19043.hp2 others(1): Show HG02886.hp1 HG03579.hp1 NA19043.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 others(1): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 a0001c0001t0011	a0001c0001t0004g0042 a0001c0001t0006g0072 a0001c0001t0010g0051 others(1): Show a0001c0001t0004g0042 a0001c0001t0006g0072 a0001c0001t0010g0051 a0001c0001t0011g0010	4	76	0.0526	8	c.711 others(27): Show c.711+64683_711+64690dupGTGTGTGT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93928856	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02451.hp1 HG02886.hp2 others(1): Show HG02055.hp2 HG02451.hp1 HG02886.hp2 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0019 others(1): Show a0001c0001t0001 a0001c0001t0013 a0001c0001t0019 a0001c0001t0023	a0001c0001t0001g0028 a0001c0001t0013g0030 a0001c0001t0019g0074 others(1): Show a0001c0001t0001g0028 a0001c0001t0013g0030 a0001c0001t0019g0074 a0001c0001t0023g0013	4	76	0.0526	8	c.711 others(27): Show c.711+98341_711+98348dupCACACACA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93933152	T T	TACAGGGA others(1): Show TACAGGGAG	intron_variant intron_variant	MODIFIER	HG02922.hp1 NA19043.hp1 HG02922.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0069 a0001c0001t0004g0070 a0001c0001t0001g0069 a0001c0001t0004g0070	2	76	0.0263	8	c.712 others(27): Show c.712-94576_712-94569dupACAGGGAG	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93997581	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02615.hp1 HG02895.hp1 others(3): Show HG02055.hp1 HG02615.hp1 HG02895.hp1 HG02922.hp1 HG02922.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0009 a0001c0001t0013 others(3): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0013 a0001c0001t0016 a0001c0001t0025 a0002c0002t0002	a0001c0001t0001g0069 a0001c0001t0009g0016 a0001c0001t0013g0055 others(3): Show a0001c0001t0001g0069 a0001c0001t0009g0016 a0001c0001t0013g0055 a0001c0001t0016g0035 a0001c0001t0025g0066 a0002c0002t0002g0008	6	76	0.0790	8	c.712 others(27): Show c.712-30129_712-30122dupTGTGTGTG	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94024102	G G	GACACACA others(1): Show GACACACAC	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01975.hp2 HG01256.hp1 HG01975.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0012 a0002c0002t0002 a0001c0001t0012 a0002c0002t0002	a0001c0001t0012g0003 a0002c0002t0002g0046 a0001c0001t0012g0003 a0002c0002t0002g0046	2	76	0.0263	8	c.712 others(25): Show c.712-3601_712-3594dupCACACACA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94034200	A A	AGAAAGAA others(1): Show AGAAAGAAG	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01975.hp2 HG02055.hp2 others(4): Show HG01433.hp2 HG01975.hp2 HG02055.hp2 HG02451.hp1 HG03017.hp1 HG03471.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0012 others(3): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0012 a0001c0001t0017 a0001c0001t0019 a0001c0001t0021	a0001c0001t0001g0028 a0001c0001t0009g0038 a0001c0001t0012g0002 others(4): Show a0001c0001t0001g0028 a0001c0001t0009g0038 a0001c0001t0012g0002 a0001c0001t0012g0003 a0001c0001t0017g0056 a0001c0001t0019g0074 a0001c0001t0021g0053	7	76	0.0921	8	c.877 others(25): Show c.877+6309_877+6310insAGAAGGAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94034200	A A	AGAAGGAA others(1): Show AGAAGGAAG	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG04228.hp1 NA18522.hp2 others(1): Show HG03453.hp1 HG04228.hp1 NA18522.hp2 NA19012.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0005 a0001c0001 a0002c0002 a0004c0005	a0001c0001t0015 a0001c0001t0023 a0002c0002t0008 others(1): Show a0001c0001t0015 a0001c0001t0023 a0002c0002t0008 a0004c0005t0018	a0001c0001t0015g0036 a0001c0001t0023g0013 a0002c0002t0008g0023 others(1): Show a0001c0001t0015g0036 a0001c0001t0023g0013 a0002c0002t0008g0023 a0004c0005t0018g0012	4	76	0.0526	8	c.877 others(25): Show c.877+6350_877+6357dupGGAAGGAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94034247	A A	AGGAAGGA others(1): Show AGGAAGGAG	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG03540.hp1 HG01884.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0016 a0001c0001t0007 a0001c0001t0016	a0001c0001t0007g0034 a0001c0001t0016g0018 a0001c0001t0007g0034 a0001c0001t0016g0018	2	76	0.0263	8	c.877 others(25): Show c.877+6357_877+6358insGGAGGGAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94067578	T T	TATAGATA others(1): Show TATAGATAG	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp2 HG02615.hp2 HG01981.hp1 HG01981.hp2 HG02615.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0006 a0001c0001t0036 a0002c0002t0002 a0001c0001t0006 a0001c0001t0036 a0002c0002t0002	a0001c0001t0006g0025 a0001c0001t0036g0001 a0002c0002t0002g0064 a0001c0001t0006g0025 a0001c0001t0036g0001 a0002c0002t0002g0064	3	76	0.0395	8	c.877 others(27): Show c.877+39722_877+39729dupTAGATAGA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94091908	T T	TTGTGTGT others(1): Show TTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01433.hp2 HG01975.hp1 others(7): Show HG00558.hp1 HG01433.hp2 HG01975.hp1 HG02055.hp1 HG02055.hp2 HG02258.hp1 HG02615.hp1 HG02922.hp2 HG03209.hp1 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0001t0009 a0001c0001t0012 others(6): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0022 a0001c0001t0032 a0001c0003t0026 a0002c0002t0002 a0002c0002t0028	a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0009g0016 others(7): Show a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0009g0016 a0001c0001t0012g0002 a0001c0001t0013g0055 a0001c0001t0022g0040 a0001c0001t0032g0027 a0001c0003t0026g0006 a0002c0002t0002g0008 a0002c0002t0028g0004	10	76	0.1316	8	c.877 others(27): Show c.877+64032_877+64039dupGTGTGTGT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94144547	A A	ATGTGTGT others(1): Show ATGTGTGTG	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02258.hp2 HG02451.hp1 others(6): Show HG00558.hp1 HG02258.hp2 HG02451.hp1 HG02818.hp2 HG02922.hp2 HG03486.hp1 HG03579.hp2 NA19240.hp1 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 a0001c0001t0017 a0001c0001t0019 a0001c0001t0029 a0001c0003t0014 a0002c0002t0028	a0001c0001t0001g0029 a0001c0001t0004g0033 a0001c0001t0004g0067 others(6): Show a0001c0001t0001g0029 a0001c0001t0004g0033 a0001c0001t0004g0067 a0001c0001t0013g0055 a0001c0001t0017g0056 a0001c0001t0019g0074 a0001c0001t0029g0007 a0001c0003t0014g0021 a0002c0002t0028g0004	9	76	0.1184	8	c.877 others(29): Show c.877+116673_877+116680dupGTGTGTGT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94145137	G G	GTGGATGG others(1): Show GTGGATGGA	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01243.hp1 HG01433.hp2 others(13): Show HG00558.hp1 HG01243.hp1 HG01433.hp2 HG02451.hp1 HG02647.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03579.hp2 NA19240.hp1 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(9): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0001t0013 a0001c0001t0017 a0001c0001t0019 a0001c0001t0024 a0001c0001t0025 a0001c0001t0029 a0001c0003t0014 a0002c0002t0028	a0001c0001t0001g0029 a0001c0001t0001g0069 a0001c0001t0006g0068 others(13): Show a0001c0001t0001g0029 a0001c0001t0001g0069 a0001c0001t0006g0068 a0001c0001t0007g0020 a0001c0001t0007g0034 a0001c0001t0007g0052 a0001c0001t0012g0002 a0001c0001t0013g0030 a0001c0001t0013g0055 a0001c0001t0017g0056 a0001c0001t0019g0074 a0001c0001t0024g0014 a0001c0001t0025g0066 a0001c0001t0029g0007 a0001c0003t0014g0021 a0002c0002t0028g0004	16	76	0.2105	8	c.877 others(29): Show c.877+117272_877+117279dupTGGATGGA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94175955	T T	TATATAGA others(1): Show TATATAGAG	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG04228.hp2 HG01433.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0027 a0001c0001t0012 a0001c0001t0027	a0001c0001t0012g0002 a0001c0001t0027g0005 a0001c0001t0012g0002 a0001c0001t0027g0005	2	76	0.0263	8	c.878 others(29): Show c.878-110393_878-110392insTATAGAGA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94186059	C C	CAAAAAAA others(1): Show CAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp2 HG02886.hp2 others(2): Show HG01981.hp1 HG01981.hp2 HG02886.hp2 HG02970.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0006 a0001c0001t0013 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0013 a0001c0001t0036 a0001c0003t0014	a0001c0001t0001g0019 a0001c0001t0006g0025 a0001c0001t0013g0030 others(2): Show a0001c0001t0001g0019 a0001c0001t0006g0025 a0001c0001t0013g0030 a0001c0001t0036g0001 a0001c0003t0014g0021	5	76	0.0658	8	c.878 others(29): Show c.878-100290_878-100289insAAAAAAAA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8			chr13	TogoVar
GPC6_chr13_93221807_94413020	94288961	A A	AGATAGAT others(1): Show AGATAGATC	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03209.hp1 NA19043.hp2 HG03098.hp2 HG03209.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0022 a0001c0001t0001 a0001c0001t0004 a0001c0001t0022	a0001c0001t0001g0071 a0001c0001t0004g0042 a0001c0001t0022g0040 a0001c0001t0001g0071 a0001c0001t0004g0042 a0001c0001t0022g0040	3	76	0.0395	8	c.100 others(27): Show c.1008+2489_1008+2490insCGATAGAT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94387730	T T	TTCTCTCT others(1): Show TTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01981.hp2 HG02647.hp2 others(1): Show HG01884.hp1 HG01981.hp2 HG02647.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0016 a0001c0001t0006 a0001c0001t0016	a0001c0001t0006g0025 a0001c0001t0006g0068 a0001c0001t0016g0018 others(1): Show a0001c0001t0006g0025 a0001c0001t0006g0068 a0001c0001t0016g0018 a0001c0001t0016g0035	4	76	0.0526	8	c.128 others(27): Show c.1289+5208_1289+5215dupCTCTCTCT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	7/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94401944	T T	TGATTGAT others(1): Show TGATTGATA	intron_variant intron_variant	MODIFIER	HG01884.hp1 NA21309.hp1 HG01884.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0018 a0001c0001t0016g0035 a0001c0001t0016g0018 a0001c0001t0016g0035	2	76	0.0263	8	c.146 others(27): Show c.1466-1068_1466-1067insTGATAGAT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPCPD1_chr20_5539439_5616006	5540508	T T	TTTTTTTT others(1): Show TTTTTTTTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00423.hp1 HG00438.hp1 others(67): Show HG00280.hp2 HG00423.hp1 HG00438.hp1 HG00558.hp2 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00738.hp2 HG01070.hp2 HG01071.hp1 HG01123.hp2 HG01358.hp2 HG01515.hp2 HG01517.hp2 HG01891.hp1 HG01981.hp2 HG02027.hp2 HG02056.hp2 HG02074.hp1 HG02083.hp1 HG02132.hp2 HG02155.hp1 HG02257.hp1 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02622.hp1 HG02698.hp2 HG02717.hp2 HG02735.hp1 HG02738.hp2 HG03225.hp2 HG03239.hp2 HG03471.hp1 HG03490.hp1 HG03688.hp2 HG04115.hp1 HG04228.hp2 NA18939.hp2 NA18942.hp1 NA18950.hp2 NA18951.hp1 NA18955.hp1 NA18959.hp2 NA18963.hp2 NA18970.hp1 NA18971.hp2 NA18975.hp1 NA18979.hp1 NA18981.hp2 NA18983.hp1 NA18991.hp2 NA18995.hp1 NA18998.hp2 NA18999.hp1 NA19003.hp1 NA19004.hp1 NA19012.hp2 NA19030.hp1 NA19067.hp2 NA19072.hp2 NA19074.hp2 NA19076.hp2 NA19077.hp1 NA19078.hp2 NA19079.hp1 NA19084.hp1 NA19090.hp2 NA20752.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0001 a0001c0001t0028 a0001c0001t0029 others(1): Show a0001c0001t0001 a0001c0001t0028 a0001c0001t0029 a0001c0011t0001	a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0001g0106 others(66): Show a0001c0001t0001g0003 a0001c0001t0001g0038 a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0128 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0237 a0001c0001t0001g0241 a0001c0001t0001g0252 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0292 a0001c0001t0001g0294 a0001c0001t0001g0328 a0001c0001t0028g0119 a0001c0001t0029g0159 a0001c0011t0001g0242	70	386	0.1814	8	c.71 others(19): Show c.7152_*7153insCAAAAAAA	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding		3930		chr20	TogoVar
GPCPD1_chr20_5539439_5616006	5568230	G G	GTATATAT others(1): Show GTATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02572.hp2 HG02818.hp2 others(4): Show HG01243.hp1 HG02572.hp2 HG02818.hp2 HG03225.hp1 HG03471.hp2 HG03579.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0020 a0001c0001t0007 a0001c0001t0020	a0001c0001t0007g0016 a0001c0001t0007g0017 a0001c0001t0007g0018 others(4): Show a0001c0001t0007g0016 a0001c0001t0007g0017 a0001c0001t0007g0018 a0001c0001t0007g0019 a0001c0001t0007g0020 a0001c0001t0007g0199 a0001c0001t0020g0116	7	386	0.0181	8	c.115 others(25): Show c.1150-678_1150-671dupTATATATA	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding	12/19			chr20	TogoVar
GPCPD1_chr20_5539439_5616006	5581814	C C	CTTTTTTT others(1): Show CTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG02040.hp2 HG02258.hp2 others(3): Show HG01167.hp2 HG02040.hp2 HG02258.hp2 HG02451.hp2 HG03471.hp1 NA18957.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0028 a0002c0002t0005 a0002c0002t0006 a0001c0001t0028 a0002c0002t0005 a0002c0002t0006	a0001c0001t0028g0119 a0002c0002t0005g0337 a0002c0002t0006g0254 others(3): Show a0001c0001t0028g0119 a0002c0002t0005g0337 a0002c0002t0006g0254 a0002c0002t0006g0366 a0002c0002t0006g0370 a0002c0002t0006g0374	6	386	0.0155	8	c.350 others(25): Show c.350-1691_350-1684dupAAAAAAAA	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding	6/19			chr20	TogoVar
GPCPD1_chr20_5539439_5616006	5604774	T T	TACACACA others(1): Show TACACACAC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00609.hp1 HG01074.hp1 others(54): Show HG00099.hp2 HG00609.hp1 HG01074.hp1 HG01168.hp2 HG01256.hp2 HG01261.hp2 HG01496.hp1 HG01884.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp2 HG02155.hp2 HG02258.hp1 HG02486.hp2 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02723.hp2 HG02886.hp2 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02976.hp2 HG03195.hp2 HG03209.hp1 HG03490.hp2 HG03492.hp1 HG03516.hp2 HG03654.hp2 HG03831.hp2 HG04115.hp2 HG04199.hp1 HG04228.hp1 NA18940.hp1 NA18943.hp2 NA18947.hp2 NA18948.hp2 NA18953.hp2 NA18956.hp2 NA18962.hp1 NA18973.hp1 NA18975.hp2 NA18982.hp1 NA18984.hp2 NA18993.hp1 NA18997.hp2 NA19002.hp2 NA19005.hp1 NA19005.hp2 NA19009.hp2 NA19043.hp1 NA19043.hp2 NA19083.hp1 NA19088.hp1 NA19090.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0003c0009	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(11): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0013 a0001c0001t0014 a0001c0001t0026 a0001c0001t0027 a0001c0001t0043 a0001c0003t0004 a0002c0002t0005 a0002c0002t0006 a0002c0002t0046 a0002c0002t0047 a0003c0009t0006	a0001c0001t0002g0225 a0001c0001t0003g0012 a0001c0001t0003g0037 others(53): Show a0001c0001t0002g0225 a0001c0001t0003g0012 a0001c0001t0003g0037 a0001c0001t0003g0118 a0001c0001t0003g0208 a0001c0001t0003g0210 a0001c0001t0003g0211 a0001c0001t0003g0212 a0001c0001t0003g0213 a0001c0001t0003g0214 a0001c0001t0003g0215 a0001c0001t0003g0216 a0001c0001t0003g0217 a0001c0001t0003g0218 a0001c0001t0003g0220 a0001c0001t0003g0221 a0001c0001t0003g0222 a0001c0001t0003g0223 a0001c0001t0003g0228 a0001c0001t0003g0229 a0001c0001t0003g0248 a0001c0001t0003g0249 a0001c0001t0003g0278 a0001c0001t0003g0279 a0001c0001t0003g0284 a0001c0001t0003g0329 a0001c0001t0003g0348 a0001c0001t0003g0349 a0001c0001t0004g0227 a0001c0001t0004g0230 a0001c0001t0004g0244 a0001c0001t0004g0307 a0001c0001t0004g0308 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0013g0027 a0001c0001t0014g0209 a0001c0001t0014g0219 a0001c0001t0026g0226 a0001c0001t0027g0224 a0001c0001t0043g0011 a0001c0003t0004g0126 a0002c0002t0005g0351 a0002c0002t0005g0353 a0002c0002t0005g0354 a0002c0002t0006g0006 a0002c0002t0006g0251 a0002c0002t0006g0350 a0002c0002t0006g0352 a0002c0002t0006g0355 a0002c0002t0006g0356 a0002c0002t0006g0358 a0002c0002t0006g0359 a0002c0002t0046g0331 a0002c0002t0047g0357 a0003c0009t0006g0330	57	386	0.1477	8	c.-28 others(23): Show c.-28-342_-28-335dupGTGTGTGT	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding	1/19			chr20	TogoVar
GPD1L_chr3_32101620_32173709	32123791	A A	AAGATAGA others(1): Show AAGATAGAT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00741.hp1 HG01074.hp1 others(65): Show HG00673.hp1 HG00741.hp1 HG01074.hp1 HG01099.hp1 HG01169.hp2 HG01255.hp2 HG01256.hp2 HG01258.hp2 HG01496.hp1 HG01928.hp1 HG02040.hp2 HG02056.hp1 HG02071.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp2 HG02145.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp2 HG02735.hp1 HG02735.hp2 HG02809.hp1 HG02818.hp2 HG02886.hp1 HG02896.hp2 HG02976.hp2 HG03017.hp2 HG03041.hp2 HG03209.hp2 HG03225.hp1 HG03492.hp2 HG03516.hp2 HG03579.hp1 HG03688.hp2 HG03704.hp1 HG03831.hp1 HG06807.hp2 NA18612.hp1 NA18942.hp2 NA18948.hp1 NA18952.hp2 NA18957.hp2 NA18959.hp2 NA18962.hp2 NA18971.hp2 NA18977.hp2 NA18978.hp2 NA18983.hp1 NA18984.hp2 NA18986.hp1 NA18992.hp2 NA19012.hp1 NA19030.hp2 NA19063.hp1 NA19078.hp2 NA19079.hp2 NA19083.hp1 NA19083.hp2 NA19088.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2 NA20905.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0020 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0033 a0001c0002t0001 a0001c0002t0004 a0001c0002t0006 a0001c0002t0009 a0001c0002t0014 a0001c0002t0029 a0001c0002t0030 a0001c0004t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0029 others(61): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0029 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0050 a0001c0001t0001g0058 a0001c0001t0001g0105 a0001c0001t0001g0111 a0001c0001t0001g0119 a0001c0001t0001g0153 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0259 a0001c0001t0001g0288 a0001c0001t0001g0312 a0001c0001t0001g0316 a0001c0001t0001g0318 a0001c0001t0002g0056 a0001c0001t0002g0063 a0001c0001t0002g0073 a0001c0001t0002g0092 a0001c0001t0002g0156 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0189 a0001c0001t0002g0228 a0001c0001t0002g0229 a0001c0001t0002g0289 a0001c0001t0003g0031 a0001c0001t0003g0038 a0001c0001t0003g0212 a0001c0001t0003g0231 a0001c0001t0003g0253 a0001c0001t0003g0254 a0001c0001t0003g0292 a0001c0001t0009g0096 a0001c0001t0013g0028 a0001c0001t0015g0099 a0001c0001t0017g0041 a0001c0001t0020g0090 a0001c0001t0023g0082 a0001c0001t0024g0250 a0001c0001t0025g0065 a0001c0001t0026g0150 a0001c0001t0033g0266 a0001c0002t0001g0102 a0001c0002t0001g0297 a0001c0002t0001g0305 a0001c0002t0001g0323 a0001c0002t0004g0149 a0001c0002t0004g0265 a0001c0002t0004g0326 a0001c0002t0004g0327 a0001c0002t0004g0330 a0001c0002t0004g0335 a0001c0002t0006g0022 a0001c0002t0006g0334 a0001c0002t0009g0303 a0001c0002t0014g0023 a0001c0002t0029g0329 a0001c0002t0030g0331 a0001c0004t0001g0146	68	360	0.1889	8	c.48- others(23): Show c.48-4241_48-4234dupTAGATAGA	GPD1L	ENSG00000152642.11	transcript	ENST00000282541.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
GPD1L_chr3_32101620_32173709	32123839	T T	TAGATAGA others(1): Show TAGATAGAC	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01243.hp2 HG02055.hp1 others(8): Show HG01167.hp2 HG01243.hp2 HG02055.hp1 HG02055.hp2 HG03239.hp2 HG03486.hp2 NA18944.hp2 NA18945.hp2 NA18984.hp1 NA19063.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0022 a0001c0002t0004 a0001c0001t0002 a0001c0001t0022 a0001c0002t0004	a0001c0001t0002g0155 a0001c0001t0002g0160 a0001c0001t0002g0175 others(8): Show a0001c0001t0002g0155 a0001c0001t0002g0160 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0178 a0001c0001t0002g0192 a0001c0001t0002g0195 a0001c0001t0002g0205 a0001c0001t0002g0210 a0001c0001t0022g0177 a0001c0002t0004g0311	11	360	0.0306	8	c.48- others(23): Show c.48-4234_48-4233insTAGACAGA	GPD1L	ENSG00000152642.11	transcript	ENST00000282541.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
GPD1L_chr3_32101620_32173709	32124055	A A	ATTTCTTT others(1): Show ATTTCTTTC	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00558.hp1 HG00609.hp2 others(44): Show HG00423.hp2 HG00558.hp1 HG00609.hp2 HG00673.hp1 HG01070.hp2 HG01074.hp2 HG01255.hp1 HG01361.hp2 HG01496.hp2 HG01928.hp2 HG01952.hp2 HG01978.hp1 HG01993.hp2 HG02056.hp1 HG02083.hp1 HG02132.hp2 HG02523.hp2 HG03654.hp1 NA18946.hp1 NA18948.hp1 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18953.hp1 NA18959.hp2 NA18968.hp1 NA18969.hp1 NA18971.hp1 NA18972.hp1 NA18979.hp2 NA18982.hp2 NA18983.hp2 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18987.hp1 NA18994.hp1 NA18995.hp2 NA18998.hp2 NA19010.hp1 NA19056.hp2 NA19058.hp1 NA19066.hp1 NA19074.hp2 NA19085.hp1 NA19087.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0020 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0035	a0001c0001t0001g0071 a0001c0001t0002g0007 a0001c0001t0002g0008 others(40): Show a0001c0001t0001g0071 a0001c0001t0002g0007 a0001c0001t0002g0008 a0001c0001t0002g0009 a0001c0001t0002g0010 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0056 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0070 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0083 a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0002g0086 a0001c0001t0002g0087 a0001c0001t0002g0089 a0001c0001t0002g0091 a0001c0001t0002g0092 a0001c0001t0002g0093 a0001c0001t0002g0094 a0001c0001t0002g0121 a0001c0001t0003g0088 a0001c0001t0020g0090 a0001c0001t0023g0082 a0001c0001t0024g0250 a0001c0001t0025g0065 a0001c0001t0035g0066	47	360	0.1306	8	c.48- others(23): Show c.48-4005_48-3998dupCTTTCTTT	GPD1L	ENSG00000152642.11	transcript	ENST00000282541.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
GPD2_chr2_156431379_156591403	156439849	A A	AAAATAAA others(1): Show AAAATAAAT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00438.hp1 others(133): Show HG00140.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01123.hp2 HG01167.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp2 HG01256.hp1 HG01261.hp1 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01928.hp2 HG01975.hp1 HG01975.hp2 HG01993.hp1 HG02015.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02056.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02109.hp2 HG02129.hp1 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02630.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp2 HG02723.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG02965.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03486.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03654.hp2 HG03704.hp2 HG03710.hp2 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04204.hp2 NA18747.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp2 NA18944.hp2 NA18945.hp1 NA18948.hp2 NA18950.hp1 NA18953.hp1 NA18959.hp2 NA18964.hp1 NA18964.hp2 NA18969.hp2 NA18971.hp2 NA18975.hp1 NA18980.hp1 NA18980.hp2 NA18983.hp1 NA18984.hp2 NA18991.hp1 NA19000.hp2 NA19004.hp1 NA19006.hp2 NA19007.hp1 NA19007.hp2 NA19009.hp1 NA19010.hp1 NA19011.hp2 NA19030.hp1 NA19043.hp2 NA19057.hp2 NA19060.hp2 NA19062.hp2 NA19066.hp2 NA19067.hp1 NA19074.hp1 NA19076.hp1 NA19078.hp1 NA19078.hp2 NA19080.hp1 NA19082.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp2 NA19087.hp1 NA19091.hp1 NA19091.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(16): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0002c0002t0002 a0002c0002t0004 a0002c0002t0006 a0002c0002t0008 a0002c0002t0009 a0002c0002t0011 a0002c0002t0012 a0002c0002t0014 a0002c0002t0020 a0002c0002t0021 a0003c0003t0007	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 others(133): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0066 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0095 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0119 a0001c0001t0001g0124 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0135 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0186 a0001c0001t0001g0199 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0003g0069 a0001c0001t0003g0086 a0001c0001t0003g0087 a0001c0001t0003g0088 a0001c0001t0003g0093 a0001c0001t0005g0151 a0001c0001t0010g0018 a0001c0001t0010g0030 a0001c0001t0010g0060 a0001c0001t0010g0146 a0001c0001t0013g0043 a0001c0001t0013g0058 a0001c0001t0015g0144 a0001c0001t0016g0039 a0001c0001t0017g0065 a0002c0002t0002g0013 a0002c0002t0002g0019 a0002c0002t0002g0029 a0002c0002t0002g0038 a0002c0002t0002g0044 a0002c0002t0002g0045 a0002c0002t0002g0046 a0002c0002t0002g0047 a0002c0002t0002g0048 a0002c0002t0002g0078 a0002c0002t0002g0080 a0002c0002t0002g0084 a0002c0002t0002g0090 a0002c0002t0002g0091 a0002c0002t0002g0092 a0002c0002t0002g0094 a0002c0002t0002g0108 a0002c0002t0002g0109 a0002c0002t0002g0126 a0002c0002t0002g0127 a0002c0002t0002g0134 a0002c0002t0002g0145 a0002c0002t0002g0147 a0002c0002t0004g0025 a0002c0002t0004g0027 a0002c0002t0004g0034 a0002c0002t0004g0035 a0002c0002t0004g0061 a0002c0002t0004g0097 a0002c0002t0004g0120 a0002c0002t0004g0121 a0002c0002t0004g0128 a0002c0002t0006g0098 a0002c0002t0006g0154 a0002c0002t0006g0155 a0002c0002t0006g0156 a0002c0002t0008g0136 a0002c0002t0009g0033 a0002c0002t0009g0131 a0002c0002t0009g0132 a0002c0002t0009g0133 a0002c0002t0009g0137 a0002c0002t0011g0075 a0002c0002t0011g0076 a0002c0002t0011g0125 a0002c0002t0012g0073 a0002c0002t0012g0096 a0002c0002t0012g0152 a0002c0002t0014g0089 a0002c0002t0014g0123 a0002c0002t0020g0020 a0002c0002t0021g0079 a0003c0003t0007g0012 a0003c0003t0007g0122	136	254	0.5354	8	c.-9+ others(23): Show c.-9+3356_-9+3363dupTAAATAAA	GPD2	ENSG00000115159.17	transcript	ENST00000438166.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
GPD2_chr2_156431379_156591403	156493958	G G	GTGTGTGT others(1): Show GTGTGTGTA	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00621.hp1 HG01346.hp2 others(12): Show HG00438.hp2 HG00621.hp1 HG01346.hp2 HG01433.hp2 HG01884.hp2 HG01928.hp1 HG02055.hp2 HG02451.hp1 HG02559.hp2 HG03654.hp1 HG04115.hp1 NA18948.hp2 NA18971.hp2 NA18975.hp2 NA18991.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0002c0002t0004 others(2): Show a0001c0001t0001 a0002c0002t0002 a0002c0002t0004 a0002c0002t0009 a0002c0002t0012	a0001c0001t0001g0248 a0002c0002t0002g0046 a0002c0002t0002g0117 others(12): Show a0001c0001t0001g0248 a0002c0002t0002g0046 a0002c0002t0002g0117 a0002c0002t0002g0118 a0002c0002t0002g0138 a0002c0002t0002g0147 a0002c0002t0004g0025 a0002c0002t0004g0027 a0002c0002t0004g0034 a0002c0002t0004g0035 a0002c0002t0004g0061 a0002c0002t0009g0033 a0002c0002t0009g0131 a0002c0002t0009g0133 a0002c0002t0012g0073	15	254	0.0591	8	c.103 others(25): Show c.103-2085_103-2084insGTGTGTAT	GPD2	ENSG00000115159.17	transcript	ENST00000438166.7	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr2	TogoVar
GPD2_chr2_156431379_156591403	156520560	G G	GTTATTTA others(1): Show GTTATTTAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA21309.hp1 NA19030.hp2 NA21309.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0184 a0002c0002t0001g0185 a0002c0002t0001g0184 a0002c0002t0001g0185	2	254	0.0079	8	c.661 others(25): Show c.661+7099_661+7106dupATTTATTT	GPD2	ENSG00000115159.17	transcript	ENST00000438166.7	protein_coding	6/16		INFO_REALIGN_3_PRIME	chr2	TogoVar

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