JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FASTKD5_chr20_3141519_3164865	0/0	a0004	764	3	0	0	3	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0005	764	2	2	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0006	764	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0007	764	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0008	764	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0009	764	1	0	1	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0010	764	1	0	0	1	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0011	764	1	1	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0012	764	1	0	0	1	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	a0013	764	1	0	0	0	1	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTK_chr7_151071624_151085809	1/1	a0001	549	352	77	60	156	18	39	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	a0002	549	63	18	4	41	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	a0003	549	3	0	2	0	0	1	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	a0004	549	1	1	0	0	0	0	copy fasta	FASTK	chr7	151071624	151085809
FASTK_chr7_151071624_151085809	0/0	a0005	549	1	0	0	1	0	0	copy fasta	FASTK	chr7	151071624	151085809
FAS_chr10_88985798_89022059	1/1	a0001	335	377	77	76	160	18	44	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	a0002	335	15	13	2	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	a0003	335	3	3	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	a0004	335	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAT1_chr4_186582794_186728856	0/1	a0001	4588	27	2	8	7	4	5	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0002	4588	19	2	1	14	0	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0003	4588	17	0	0	16	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0004	4588	12	0	2	7	1	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0005	4588	12	11	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0006	4588	11	0	2	8	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0007	4588	9	0	4	3	0	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0008	4588	9	4	0	5	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0009	4588	9	3	1	4	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0010	4588	8	5	3	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0011	4588	8	0	3	2	2	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0012	4588	8	2	4	1	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0013	4588	7	0	3	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0014	4588	7	0	4	0	1	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0015	4588	5	0	1	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0016	4588	5	0	0	5	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0017	4588	4	0	0	1	1	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0018	4588	4	0	3	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0019	4588	4	0	0	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0020	4588	4	3	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0021	4588	4	0	0	2	2	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0022	4588	4	1	0	0	1	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0023	4588	4	0	0	4	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0024	4588	3	0	0	3	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0025	4588	3	3	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0026	4588	3	3	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0027	4588	3	1	2	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0028	4588	3	0	0	3	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0029	4588	3	3	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0030	4588	3	0	2	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	a0031	4588	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856