Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGPAT2_chr9_136668143_136692457	0/0	a0003	278	2	2	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	a0004	278	2	1	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	a0005	278	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	a0006	278	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	a0007	278	1	0	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	a0008	278	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT3_chr21_43860223_43992592	1/1	a0001	376	340	89	70	124	15	40	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	a0002	376	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	a0003	376	1	0	0	0	1	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT4_chr6_161124967_161279061	1/1	a0001	378	264	90	60	78	6	28	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT5_chr8_6703642_6766503	1/1	a0001	364	398	83	75	180	15	43	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	a0002	364	4	1	1	0	0	2	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	a0003	364	1	0	0	0	1	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	a0004	364	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPS_chr2_177387773_177548834	1/1	a0001	658	258	78	40	114	2	22	copy fasta	AGPS	chr2	177387773	177548834
AGR2_chr7_16786811_16809999	1/1	a0001	175	460	98	80	218	18	44	copy fasta	AGR2	chr7	16786811	16809999
AGR3_chr7_16854412_16886983	1/1	a0001	166	454	100	76	210	18	48	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	a0002	166	2	0	0	2	0	0	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	a0003	166	1	0	0	0	0	1	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	a0004	166	1	0	0	0	0	1	copy fasta	AGR3	chr7	16854412	16886983
AGRN_chr1_1015120_1061116	1/1	a0001	2045	148	35	36	63	0	12	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0002	2045	6	5	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0003	2042	6	6	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0004	2045	6	5	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0005	2045	5	0	0	5	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0006	2045	4	0	1	0	0	3	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0007	2045	4	4	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0008	2045	3	3	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0009	2045	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0010	2045	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0011	2045	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0012	2045	2	0	0	2	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0013	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0014	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0015	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0016	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0017	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0018	2045	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0019	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0020	2045	1	0	0	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0021	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0022	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0023	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0024	2045	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0025	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0026	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0027	1471	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0028	2073	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0029	2113	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	a0030	2045	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116