JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FERD3L_chr7_19139782_19150421	0/0	a0002	167	75	1	13	47	3	11	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	a0003	166	44	0	2	42	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	a0004	167	1	0	0	1	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	a0005	166	1	1	0	0	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	a0006	166	1	0	0	1	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERMT1_chr20_6069845_6128030	1/1	a0001	677	168	50	27	59	4	26	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0002	677	147	27	17	87	7	9	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0003	677	20	1	3	14	0	2	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0004	677	11	10	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0005	677	7	0	6	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0006	677	3	0	3	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0007	677	2	0	2	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0008	677	2	0	0	2	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0009	677	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0010	677	1	0	0	0	1	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0011	677	1	0	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0012	677	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0013	677	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0014	677	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0015	677	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	a0016	677	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT2_chr14_52852273_52956050	1/1	a0001	680	286	74	57	116	12	25	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	a0002	680	1	0	0	0	0	1	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	a0003	680	1	0	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT3_chr11_64201721_64228891	1/1	a0001	663	361	81	66	161	12	39	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	a0002	663	3	3	0	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	a0003	663	2	0	0	0	0	2	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	a0004	663	1	0	0	0	0	1	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	a0005	663	1	0	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	a0006	663	1	0	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	a0007	663	1	0	0	1	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FER_chr5_108742897_109201841	1/1	a0001	822	117	57	17	22	3	16	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	a0002	822	16	0	1	12	1	2	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	a0003	822	3	3	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	a0004	822	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FES_chr15_90879504_90900776	1/1	a0001	822	406	97	71	172	17	47	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	a0002	822	4	3	1	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	a0003	822	1	0	0	0	1	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	a0004	822	1	0	0	0	0	1	copy fasta	FES	chr15	90879504	90900776
FETUB_chr3_186635399_186658141	1/0	a0001	382	362	61	67	180	13	40	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0002	382	44	5	7	25	3	4	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0003	382	23	9	4	8	0	2	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0004	382	8	6	2	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0005	382	7	7	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0006	382	4	4	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0007	382	2	2	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0008	382	2	0	0	0	2	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0009	382	2	2	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0010	382	1	0	0	0	0	1	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0011	382	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141