JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FETUB_chr3_186635399_186658141	0/0	a0012	382	1	0	0	0	0	1	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0013	382	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	a0014	382	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141
FEV_chr2_218976087_218990184	1/1	a0001	238	364	88	66	162	8	38	copy fasta	FEV	chr2	218976087	218990184
FEZ1_chr11_125437881_125501265	1/1	a0001	392	309	73	52	141	14	27	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	a0002	392	43	15	10	15	2	1	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	a0003	392	2	0	2	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	a0004	392	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	a0005	401	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ2_chr2_36547258_36603168	0/0	a0001	353	242	55	34	128	6	19	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0002	353	123	26	28	45	6	18	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	1/1	a0003	353	25	4	6	5	3	5	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0004	353	4	4	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0005	353	3	0	1	1	1	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0006	353	3	3	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0007	353	2	1	1	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0008	353	1	1	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	a0009	353	1	0	0	1	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZF1_chr7_122296303_122309750	1/1	a0001	475	430	97	77	195	18	41	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	a0002	475	1	0	1	0	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	a0003	475	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	a0004	475	1	1	0	0	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	a0005	475	1	0	0	0	0	1	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	a0006	475	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	a0007	475	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF2_chr3_62364681_62378550	1/1	a0001	459	390	82	65	187	18	36	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	a0002	183	25	4	3	11	0	7	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	a0003	462	4	4	0	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	a0004	178	1	0	0	0	0	1	copy fasta	FEZF2	chr3	62364681	62378550
FFAR1_chr19_35342902_35358864	0/1	a0001	300	397	97	72	165	17	45	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	1/0	a0002	300	56	1	10	43	1	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	a0003	300	3	0	0	2	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	a0004	300	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	a0005	300	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	a0006	300	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	a0007	300	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR2_chr19_35443257_35456767	1/1	a0001	330	437	92	81	203	18	41	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	a0002	330	10	1	2	0	0	7	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	a0003	330	4	4	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	a0004	330	1	0	0	1	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	a0005	330	1	1	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	a0006	330	1	0	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR3_chr19_35353460_35365489	0/0	a0000	0	1	0	0	0	0	1	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	1/0	a0001	346	143	64	12	63	3	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0002	346	92	10	13	52	4	13	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0003	346	61	1	16	37	1	6	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0004	346	36	1	21	0	7	7	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0005	346	29	15	2	4	0	8	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0006	346	20	0	2	14	1	3	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	a0007	346	16	1	9	3	2	1	copy fasta	FFAR3	chr19	35353460	35365489