JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FKBPL_chr6_32123707_32135288	0/0	a0006	349	1	1	0	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKRP_chr19_46741057_46763575	1/1	a0001	495	420	94	86	180	16	42	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	a0002	495	3	0	0	0	0	3	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	a0003	495	2	2	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	a0004	495	2	0	0	0	0	2	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	a0005	495	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	a0006	495	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	a0007	495	1	0	0	0	0	1	copy fasta	FKRP	chr19	46741057	46763575
FKTN_chr9_105553131_105646118	1/0	a0001	461	302	57	41	167	8	28	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/1	a0002	461	48	14	13	14	4	2	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0003	461	13	13	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0004	461	8	0	6	0	2	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0005	461	3	3	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0006	461	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0007	461	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0008	461	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	a0009	461	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FLACC1_chr2_201283271_201362345	0/1	a0001	422	255	68	33	119	5	29	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	1/0	a0002	422	110	19	35	41	5	9	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	a0003	422	2	2	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	a0004	422	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	a0005	422	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	a0006	422	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLAD1_chr1_154978344_154998111	1/1	a0001	587	279	94	54	79	14	36	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	a0002	587	3	0	0	3	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	a0003	587	2	0	0	2	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLCN_chr17_17207212_17242168	1/1	a0001	579	369	90	75	142	16	44	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	a0002	579	1	0	1	0	0	0	copy fasta	FLCN	chr17	17207212	17242168
FLG2_chr1_152343735_152365006	1/1	a0001	2391	147	40	19	60	7	19	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0002	2299	68	0	11	48	0	9	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0003	2391	50	0	0	50	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0004	2299	37	3	11	19	1	3	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0005	2391	22	0	9	5	2	6	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0006	2376	21	20	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0007	2299	17	0	10	7	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0008	2391	6	6	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0009	2391	5	0	0	5	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0010	2391	4	4	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0011	2391	4	0	1	1	0	2	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0012	2391	3	3	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0013	2376	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0014	3053	2	0	0	2	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0015	2376	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0016	2391	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0017	2316	2	2	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0018	2391	2	0	2	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0019	2391	2	0	0	2	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0020	2391	2	0	2	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0021	2391	2	0	0	2	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0022	2376	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006