JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLG2_chr1_152343735_152365006	0/0	a0023	2376	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0024	2299	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0025	2224	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0026	2299	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0027	2314	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0028	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0029	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0030	2299	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0031	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0032	2316	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0033	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0034	2391	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0035	2391	1	0	0	1	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0036	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0037	2391	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0038	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0039	2391	1	0	0	0	0	1	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0040	2391	1	1	0	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG2_chr1_152343735_152365006	0/0	a0041	2391	1	0	1	0	0	0	copy fasta	FLG2	chr1	152343735	152365006
FLG_chr1_152297165_152330239	0/0	a0001	4710	45	0	13	28	1	3	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/1	a0002	4385	41	6	15	11	2	6	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0003	4061	27	2	6	7	3	9	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0004	4710	19	0	7	12	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0005	4061	16	0	0	16	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0006	4385	14	0	1	13	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0007	4385	12	0	0	12	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0008	4061	9	0	0	9	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0009	4385	7	0	3	2	1	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0010	4062	6	6	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0011	4710	6	0	0	6	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0012	4062	6	6	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0013	4385	4	4	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0014	4710	4	0	0	4	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0015	4710	4	0	0	4	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0016	4710	4	0	0	4	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0017	4710	4	0	0	3	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0018	4061	4	4	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0019	4062	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0020	4062	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0021	4062	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0022	3088	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0023	4061	3	0	3	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0024	4709	3	2	0	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0025	4061	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0026	4386	3	3	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0027	4385	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0028	3212	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0029	4710	3	0	0	3	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0030	4710	3	0	0	2	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0031	4710	3	0	0	0	0	3	copy fasta	FLG	chr1	152297165	152330239