JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLT1_chr13_28295346_28500128	1/1	a0001	1338	221	86	36	53	12	32	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	a0002	1338	2	0	2	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	a0003	1338	1	0	0	1	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	a0004	1338	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	a0005	1338	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	a0006	1338	1	1	0	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT1_chr13_28295346_28500128	0/0	a0007	1338	1	0	1	0	0	0	copy fasta	FLT1	chr13	28295346	28500128
FLT3LG_chr19_49469215_49491231	1/1	a0001	235	331	92	72	111	12	42	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3LG_chr19_49469215_49491231	0/0	a0002	235	1	0	0	1	0	0	copy fasta	FLT3LG	chr19	49469215	49491231
FLT3_chr13_27998274_28105576	0/1	a0001	993	96	9	23	40	6	17	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	1/0	a0002	993	71	13	16	20	7	14	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0003	993	47	29	3	10	3	2	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0004	993	36	7	4	22	0	3	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0005	993	13	9	4	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0006	993	6	6	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0007	993	2	0	1	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0008	993	2	0	2	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0009	993	2	0	2	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0010	993	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0011	993	2	2	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0012	993	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0013	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0014	993	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0015	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0016	993	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0017	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0018	993	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0019	993	1	0	1	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0020	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0021	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0022	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0023	993	1	1	0	0	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT3_chr13_27998274_28105576	0/0	a0024	993	1	0	0	1	0	0	copy fasta	FLT3	chr13	27998274	28105576
FLT4_chr5_180596506_180654600	0/0	a0001	1363	176	38	42	76	4	16	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0002	1363	153	34	20	71	8	20	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0003	1363	9	1	7	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0004	1363	6	0	4	0	1	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0005	1363	5	5	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0006	1363	4	3	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0007	1363	4	2	1	0	1	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0008	1363	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0009	1363	2	0	2	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0010	1363	2	0	0	0	1	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0011	1363	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0012	1363	2	0	0	0	2	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0013	1363	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0014	1363	2	2	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0015	1363	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0016	1363	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0017	1363	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600