JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXL1_chr16_86573549_86588478	0/0	a0008	345	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0009	345	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0010	345	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0011	345	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL2NB_chr3_138942217_138958990	1/1	a0001	175	368	72	67	176	11	40	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	a0002	175	16	16	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	a0003	92	6	0	5	0	1	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	a0004	175	3	3	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	a0005	114	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	a0006	175	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2NB_chr3_138942217_138958990	0/0	a0007	175	1	1	0	0	0	0	copy fasta	FOXL2NB	chr3	138942217	138958990
FOXL2_chr3_138939224_138952137	1/0	a0001	376	308	45	69	149	12	32	copy fasta	FOXL2	chr3	138939224	138952137
FOXL2_chr3_138939224_138952137	0/1	a0002	376	90	51	7	23	0	8	copy fasta	FOXL2	chr3	138939224	138952137
FOXL3_chr7_285170_296488	1/1	a0001	233	200	32	35	103	7	21	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0002	233	91	7	33	28	9	14	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0003	233	63	40	6	13	1	3	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0004	233	22	2	4	13	1	2	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0005	233	11	1	2	3	0	5	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0006	233	7	6	1	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0007	233	4	3	1	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0008	233	2	2	0	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0009	233	1	0	0	0	0	1	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0010	233	1	1	0	0	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0011	233	1	0	0	1	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXL3_chr7_285170_296488	0/0	a0012	233	1	0	0	1	0	0	copy fasta	FOXL3	chr7	285170	296488
FOXM1_chr12_2852680_2882174	1/1	a0001	763	289	33	55	150	10	39	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0002	763	94	24	18	45	0	7	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0003	763	28	26	2	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0004	763	4	0	0	4	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0005	763	4	4	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0006	763	4	0	1	2	1	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0007	763	4	0	4	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0008	763	3	2	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0009	763	2	2	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0010	763	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0011	763	1	0	0	1	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0012	763	1	0	0	0	1	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0013	763	1	0	1	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0014	763	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXM1_chr12_2852680_2882174	0/0	a0015	763	1	1	0	0	0	0	copy fasta	FOXM1	chr12	2852680	2882174
FOXN1_chr17_28501348_28543900	1/1	a0001	648	177	33	29	79	8	26	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0002	648	110	56	21	18	2	13	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0003	648	35	0	6	24	3	2	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0004	648	25	0	10	14	1	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0005	648	3	0	3	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0006	648	2	2	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0007	648	1	1	0	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0008	648	1	0	0	1	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0009	648	1	0	1	0	0	0	copy fasta	FOXN1	chr17	28501348	28543900
FOXN1_chr17_28501348_28543900	0/0	a0010	648	1	0	0	0	0	1	copy fasta	FOXN1	chr17	28501348	28543900