JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FPR1_chr19_51740773_51756878	0/0	a0016	350	5	0	0	5	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0017	350	3	0	0	3	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0018	350	2	2	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0019	350	2	2	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0020	350	2	1	1	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0021	350	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0022	350	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0023	350	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0024	350	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0025	350	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0026	350	1	0	0	1	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0027	350	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0028	350	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0029	350	1	1	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR2_chr19_51756180_51775531	1/1	a0001	351	470	98	82	220	18	50	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	a0002	351	1	1	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR2_chr19_51756180_51775531	0/0	a0003	351	1	1	0	0	0	0	copy fasta	FPR2	chr19	51756180	51775531
FPR3_chr19_51790157_51831190	1/1	a0001	353	412	96	78	178	16	42	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	a0002	353	2	2	0	0	0	0	copy fasta	FPR3	chr19	51790157	51831190
FPR3_chr19_51790157_51831190	0/0	a0003	353	2	0	0	2	0	0	copy fasta	FPR3	chr19	51790157	51831190
FRA10AC1_chr10_93662883_93707592	1/0	a0001	315	146	46	23	60	2	14	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/1	a0002	315	105	3	26	55	7	13	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	a0003	315	84	23	8	48	2	3	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	a0004	315	22	7	7	3	3	2	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	a0005	315	3	3	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	a0006	315	2	0	0	2	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	a0007	315	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRA10AC1_chr10_93662883_93707592	0/0	a0008	315	1	1	0	0	0	0	copy fasta	FRA10AC1	chr10	93662883	93707592
FRAS1_chr4_78052323_78549269	0/0	a0001	4012	13	0	2	5	1	5	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0002	4012	11	1	0	5	2	3	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0003	4012	10	0	0	8	0	2	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0004	4012	9	3	2	3	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0005	4012	9	2	0	7	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0006	4012	5	3	0	0	0	2	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0007	4012	4	1	0	3	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0008	4012	4	4	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0009	4012	3	2	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0010	4012	3	0	0	2	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0011	4012	2	0	0	1	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0012	4012	2	0	2	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/1	a0013	4012	2	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0014	4012	2	0	0	0	1	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0015	4012	2	1	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0016	4012	2	0	1	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0017	4012	2	2	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0018	4012	2	2	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0019	4012	2	0	0	1	1	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0020	4012	2	0	1	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0021	4012	2	1	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0022	4012	2	2	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269