JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FRAS1_chr4_78052323_78549269	0/0	a0073	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0074	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0075	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0076	4012	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0077	4012	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0078	4012	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0079	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0080	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0081	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0082	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0083	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0084	4012	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0085	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0086	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0087	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0088	4012	1	0	1	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0089	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0090	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0091	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0092	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0093	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0094	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0095	4012	1	0	0	0	0	1	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0096	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0097	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0098	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0099	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0100	4012	1	0	0	1	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0101	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAS1_chr4_78052323_78549269	0/0	a0102	4012	1	1	0	0	0	0	copy fasta	FRAS1	chr4	78052323	78549269
FRAT1_chr10_97314271_97326915	1/1	a0001	279	428	95	77	194	18	42	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	a0002	279	1	0	1	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT1_chr10_97314271_97326915	0/0	a0003	279	1	1	0	0	0	0	copy fasta	FRAT1	chr10	97314271	97326915
FRAT2_chr10_97327497_97339729	1/0	a0001	233	398	93	63	192	13	36	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/1	a0002	233	47	3	23	7	3	10	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	a0003	233	4	0	0	4	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FRAT2_chr10_97327497_97339729	0/0	a0004	233	1	0	0	1	0	0	copy fasta	FRAT2	chr10	97327497	97339729
FREM1_chr9_14732152_14915428	0/0	a0001	2179	34	10	5	17	0	2	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0002	2179	26	0	13	13	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0003	2179	25	7	6	9	2	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0004	2179	17	0	7	6	1	3	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	1/0	a0005	2179	10	1	2	4	0	2	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0006	2179	9	5	2	0	2	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0007	2179	9	0	0	5	0	4	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0008	2179	9	3	1	5	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0009	2179	8	3	2	2	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/1	a0010	2179	8	1	2	2	0	2	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0011	2179	8	0	2	5	0	1	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0012	2179	7	0	4	3	0	0	copy fasta	FREM1	chr9	14732152	14915428
FREM1_chr9_14732152_14915428	0/0	a0013	2179	6	3	1	1	0	1	copy fasta	FREM1	chr9	14732152	14915428