JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAA_chr17_80096581_80124881	0/0	a0022	952	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0023	952	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0024	952	1	0	0	0	0	1	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0025	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0026	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0027	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0028	952	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAB1_chr4_143331876_143479565	1/1	a0001	694	194	90	40	28	10	24	copy fasta	GAB1	chr4	143331876	143479565
GAB2_chr11_78210293_78422820	1/1	a0001	676	270	85	42	116	4	21	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0002	676	5	5	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0003	676	5	0	5	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0004	676	2	0	1	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0005	676	2	0	0	2	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0006	676	1	0	0	1	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0007	676	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0008	676	1	1	0	0	0	0	copy fasta	GAB2	chr11	78210293	78422820
GAB2_chr11_78210293_78422820	0/0	a0009	676	1	0	0	0	0	1	copy fasta	GAB2	chr11	78210293	78422820
GAB3_chrX_154670249_154756077	1/1	a0001	587	239	71	50	87	10	19	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0002	587	6	0	0	5	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0003	587	4	3	1	0	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0004	587	4	0	1	0	1	2	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0005	313	1	0	0	0	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0006	587	1	0	0	0	0	1	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0007	587	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB3_chrX_154670249_154756077	0/0	a0008	82	1	0	0	1	0	0	copy fasta	GAB3	chrX	154670249	154756077
GAB4_chr22_16956936_17013222	1/0	a0001	574	256	67	41	116	14	17	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/1	a0002	162	146	16	31	75	2	21	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	a0003	574	12	0	6	0	0	6	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	a0004	574	10	9	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	a0005	162	2	2	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	a0006	574	2	2	0	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	a0007	574	1	0	1	0	0	0	copy fasta	GAB4	chr22	16956936	17013222
GAB4_chr22_16956936_17013222	0/0	a0008	574	1	0	0	1	0	0	copy fasta	GAB4	chr22	16956936	17013222
GABARAPL1_chr12_10207877_10228128	1/1	a0001	117	448	92	74	212	18	50	copy fasta	GABARAPL1	chr12	10207877	10228128
GABARAPL2_chr16_75561379_75582881	1/1	a0001	117	366	86	70	150	12	46	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAPL2_chr16_75561379_75582881	0/0	a0002	117	2	0	2	0	0	0	copy fasta	GABARAPL2	chr16	75561379	75582881
GABARAP_chr17_7235008_7247449	1/1	a0001	117	388	90	72	174	18	32	copy fasta	GABARAP	chr17	7235008	7247449
GABBR1_chr6_29597238_29638183	0/1	a0001	961	377	89	71	160	11	45	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	a0002	961	21	0	0	20	0	1	copy fasta	GABBR1	chr6	29597238	29638183
GABBR1_chr6_29597238_29638183	0/0	a0003	961	9	3	5	0	1	0	copy fasta	GABBR1	chr6	29597238	29638183
GABBR2_chr9_98283109_98713935	1/1	a0001	941	113	34	30	26	3	18	copy fasta	GABBR2	chr9	98283109	98713935
GABBR2_chr9_98283109_98713935	0/0	a0002	941	51	28	10	10	1	2	copy fasta	GABBR2	chr9	98283109	98713935
GABPA_chr21_25729972_25777460	1/1	a0001	454	375	94	58	171	14	36	copy fasta	GABPA	chr21	25729972	25777460
GABPA_chr21_25729972_25777460	0/0	a0002	454	1	0	0	1	0	0	copy fasta	GABPA	chr21	25729972	25777460
GABPB1_chr15_50270389_50360198	0/0	a0001	383	366	82	74	160	6	44	copy fasta	GABPB1	chr15	50270389	50360198
GABPB2_chr1_151065761_151130542	1/1	a0001	448	206	51	41	74	13	25	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0002	448	22	13	2	2	1	4	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0003	448	12	3	7	0	1	1	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0004	448	11	8	0	0	1	2	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0005	448	9	9	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542