JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GABPB2_chr1_151065761_151130542	0/0	a0006	448	1	0	0	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0007	395	1	0	0	1	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0008	448	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABPB2_chr1_151065761_151130542	0/0	a0009	448	1	1	0	0	0	0	copy fasta	GABPB2	chr1	151065761	151130542
GABRA1_chr5_161843120_161904971	1/1	a0001	456	391	89	60	188	14	38	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	a0002	456	2	0	0	2	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA1_chr5_161843120_161904971	0/0	a0003	456	1	1	0	0	0	0	copy fasta	GABRA1	chr5	161843120	161904971
GABRA2_chr4_46238548_46395128	1/1	a0001	451	257	90	49	78	16	22	copy fasta	GABRA2	chr4	46238548	46395128
GABRA2_chr4_46238548_46395128	0/0	a0002	451	1	0	1	0	0	0	copy fasta	GABRA2	chr4	46238548	46395128
GABRA3_chrX_152161234_152456315	1/1	a0001	492	204	64	32	81	7	18	copy fasta	GABRA3	chrX	152161234	152456315
GABRA4_chr4_46913900_46998581	1/0	a0001	554	250	63	35	119	8	24	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/1	a0002	554	114	21	24	56	4	8	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	a0003	554	4	4	0	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	a0004	554	1	0	1	0	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA4_chr4_46913900_46998581	0/0	a0005	554	1	0	0	1	0	0	copy fasta	GABRA4	chr4	46913900	46998581
GABRA5_chr15_26862062_26954208	1/1	a0001	462	374	90	60	166	12	44	copy fasta	GABRA5	chr15	26862062	26954208
GABRA5_chr15_26862062_26954208	0/0	a0002	462	2	2	0	0	0	0	copy fasta	GABRA5	chr15	26862062	26954208
GABRA6_chr5_161680721_161707592	1/0	a0001	453	389	73	69	194	11	41	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	a0002	453	28	18	7	0	2	1	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/1	a0003	453	6	0	0	2	1	2	copy fasta	GABRA6	chr5	161680721	161707592
GABRA6_chr5_161680721_161707592	0/0	a0004	453	1	1	0	0	0	0	copy fasta	GABRA6	chr5	161680721	161707592
GABRB1_chr4_47026567_47431447	1/1	a0001	474	156	61	22	44	4	23	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	a0002	474	1	1	0	0	0	0	copy fasta	GABRB1	chr4	47026567	47431447
GABRB1_chr4_47026567_47431447	0/0	a0003	474	1	0	0	0	0	1	copy fasta	GABRB1	chr4	47026567	47431447
GABRB2_chr5_161283436_161551725	1/1	a0001	512	263	72	52	115	6	16	copy fasta	GABRB2	chr5	161283436	161551725
GABRB2_chr5_161283436_161551725	0/0	a0002	512	3	0	0	3	0	0	copy fasta	GABRB2	chr5	161283436	161551725
GABRB3_chr15_26538552_26778066	1/1	a0001	473	204	76	32	52	14	28	copy fasta	GABRB3	chr15	26538552	26778066
GABRD_chr1_2014345_2035758	1/1	a0001	452	357	82	74	139	16	44	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	a0002	452	5	5	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	a0003	452	1	0	0	1	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRD_chr1_2014345_2035758	0/0	a0004	452	1	1	0	0	0	0	copy fasta	GABRD	chr1	2014345	2035758
GABRE_chrX_151948124_151979676	0/0	a0001	506	225	34	31	121	10	29	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	1/1	a0002	506	81	30	18	24	3	4	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0003	506	4	4	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0004	506	2	2	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0005	506	2	2	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0006	506	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0007	506	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0008	506	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0009	506	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0010	506	1	0	1	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0011	506	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0012	504	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0013	506	1	0	0	0	0	1	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0014	506	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0015	363	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0016	506	1	1	0	0	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRE_chrX_151948124_151979676	0/0	a0017	375	1	0	0	1	0	0	copy fasta	GABRE	chrX	151948124	151979676
GABRG1_chr4_46030769_46129054	1/1	a0001	465	302	84	54	117	12	33	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	a0002	465	3	0	0	3	0	0	copy fasta	GABRG1	chr4	46030769	46129054