JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GADD45A_chr1_67680201_67693334	1/1	a0001	165	404	98	64	188	16	36	copy fasta	GADD45A	chr1	67680201	67693334
GADD45B_chr19_2471127_2483257	1/1	a0001	160	460	94	88	212	16	48	copy fasta	GADD45B	chr19	2471127	2483257
GADD45GIP1_chr19_12948119_12962223	1/1	a0001	222	354	85	71	143	16	37	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0002	222	3	3	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0003	222	3	0	0	3	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0004	222	2	0	0	2	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0005	222	2	2	0	0	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0006	222	2	0	1	0	0	1	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0007	222	2	0	0	2	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0008	222	1	0	0	0	0	1	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0009	222	1	0	0	0	0	1	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0010	222	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45GIP1_chr19_12948119_12962223	0/0	a0011	222	1	0	0	1	0	0	copy fasta	GADD45GIP1	chr19	12948119	12962223
GADD45G_chr9_89600012_89611555	1/1	a0001	159	444	86	84	210	14	48	copy fasta	GADD45G	chr9	89600012	89611555
GADD45G_chr9_89600012_89611555	0/0	a0002	159	8	8	0	0	0	0	copy fasta	GADD45G	chr9	89600012	89611555
GADL1_chr3_30721197_30899661	1/1	a0001	521	267	61	49	124	4	27	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0002	521	4	3	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0003	521	2	2	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0004	521	2	2	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0005	521	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0006	521	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0007	521	1	0	0	0	0	1	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0008	491	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0009	521	1	1	0	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0010	472	1	0	0	1	0	0	copy fasta	GADL1	chr3	30721197	30899661
GADL1_chr3_30721197_30899661	0/0	a0011	521	1	0	1	0	0	0	copy fasta	GADL1	chr3	30721197	30899661
GAGE10_chrX_49298646_49324841	0/0	a0001	116	287	61	50	140	11	25	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	a0002	116	14	10	4	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE10_chrX_49298646_49324841	0/0	a0003	116	1	1	0	0	0	0	copy fasta	GAGE10	chrX	49298646	49324841
GAGE12D_chrX_49536733_49554094	0/0	a0001	117	29	2	13	12	0	2	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0002	116	11	1	3	6	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0003	117	11	3	2	5	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0004	117	8	0	1	5	1	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0005	116	3	3	0	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0006	117	3	0	0	0	1	2	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0007	117	2	0	0	2	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0008	116	1	0	1	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0009	22	1	0	0	0	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0010	117	1	1	0	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0011	86	1	0	0	0	0	1	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12D_chrX_49536733_49554094	0/0	a0012	117	1	0	1	0	0	0	copy fasta	GAGE12D	chrX	49536733	49554094
GAGE12E_chrX_49546289_49563645	0/0	a0001	117	31	9	6	14	0	2	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0002	117	17	9	3	3	0	2	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0003	117	14	6	3	5	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0004	117	10	0	1	5	1	3	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0005	116	8	1	2	4	1	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0006	116	7	7	0	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0007	117	5	0	1	3	0	1	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0008	117	4	0	0	2	0	2	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0009	116	1	0	0	1	0	0	copy fasta	GAGE12E	chrX	49546289	49563645