JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAL3ST4_chr7_100154244_100173617	0/0	a0009	359	1	1	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0010	486	1	1	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0011	486	1	0	0	1	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GALC_chr14_87928014_87998182	0/1	a0001	685	148	48	29	50	4	16	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0002	685	131	17	22	70	6	16	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	1/0	a0003	685	28	12	1	14	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0004	685	23	1	15	0	5	2	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0005	685	12	0	0	12	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0006	685	7	0	2	3	1	1	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0007	685	4	4	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0008	685	4	4	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0009	685	2	2	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0010	685	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0011	685	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0012	685	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0013	685	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0014	685	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0015	685	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0016	685	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0017	685	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0018	685	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0019	685	1	0	0	0	0	1	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	a0020	685	1	0	1	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALE_chr1_23790599_23805754	1/1	a0001	348	400	84	84	174	18	38	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	a0002	348	5	5	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	a0003	348	2	0	0	2	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	a0004	348	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	a0005	348	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	a0006	348	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALK1_chr17_75752894_75770192	1/1	a0001	392	440	93	86	198	18	43	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	a0002	392	7	0	0	7	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	a0003	392	3	3	0	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	a0004	392	1	0	0	0	0	1	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	a0005	392	1	0	0	1	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK2_chr15_49165247_49336882	1/1	a0001	458	346	82	56	140	16	50	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	a0002	458	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	a0003	458	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALM_chr2_38661114_38739765	1/1	a0001	342	245	62	50	97	7	27	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	a0002	342	80	29	8	29	1	13	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	a0003	342	2	2	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	a0004	342	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALNS_chr16_88808734_88861947	1/0	a0001	522	309	41	75	140	16	36	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/1	a0002	522	27	2	9	12	0	3	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0003	522	19	19	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0004	522	11	11	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0005	522	10	9	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0006	522	7	0	2	0	2	3	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0007	522	6	6	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0008	522	5	0	0	5	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0009	522	4	4	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947