JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GALNS_chr16_88808734_88861947	0/0	a0010	522	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0011	522	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0012	522	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0013	522	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	a0014	522	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNT10_chr5_154185733_154425984	1/1	a0001	603	234	77	60	54	13	28	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	a0002	603	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	a0003	603	1	0	0	0	1	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT11_chr7_152020674_152127340	1/1	a0001	608	264	77	50	103	8	24	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	a0002	608	8	0	0	8	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	a0003	608	8	6	2	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	a0004	608	2	2	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	a0005	608	1	1	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	a0006	608	1	0	0	1	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT12_chr9_98802670_98855081	1/1	a0001	581	325	94	59	119	13	38	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0002	581	43	0	7	30	1	5	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0003	581	3	0	2	0	1	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0004	581	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0005	581	1	0	0	0	1	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0006	581	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0007	581	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	a0008	581	1	0	0	0	0	1	copy fasta	GALNT12	chr9	98802670	98855081
GALNT13_chr2_153866922_154458979	1/1	a0001	556	213	57	56	60	10	28	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	a0002	556	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT14_chr2_30905467_31143440	1/1	a0001	552	185	67	40	56	5	15	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	a0002	552	34	8	7	8	4	7	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	a0003	552	4	3	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	a0004	552	1	0	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	a0005	552	1	0	0	0	1	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	a0006	552	1	0	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT15_chr3_16169680_16235165	1/1	a0001	639	250	33	48	126	13	28	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0002	639	58	11	6	31	1	9	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0003	639	53	30	18	0	1	4	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0004	639	8	0	1	7	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0005	639	6	0	2	0	1	3	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0006	639	3	3	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0007	639	3	3	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0008	639	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0009	639	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0010	639	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0011	639	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0012	639	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	a0013	639	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT16_chr14_69255158_69359466	1/1	a0001	558	227	64	32	84	8	37	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0002	558	46	7	12	13	6	8	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0003	558	22	18	4	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0004	558	4	0	0	4	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0005	558	2	2	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0006	558	2	0	0	0	0	2	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0007	558	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466