JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GALNTL5_chr7_151951446_152024929	0/0	a0017	443	1	0	0	1	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL6_chr4_171808404_173046559	0/0	a0001	601	40	34	0	2	2	2	copy fasta	GALNTL6	chr4	171808404	173046559
GALP_chr19_56171008_56190775	1/0	a0001	116	322	62	57	165	9	28	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/1	a0002	116	117	27	21	40	9	19	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	a0003	116	2	2	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	a0004	116	1	1	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	a0005	116	1	0	0	0	0	1	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	a0006	116	1	0	0	1	0	0	copy fasta	GALP	chr19	56171008	56190775
GALR1_chr18_77244848_77282900	0/1	a0001	349	314	54	63	144	14	38	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	1/0	a0002	349	32	29	2	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0003	349	13	0	4	9	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0004	349	2	2	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0005	349	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0006	349	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0007	349	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0008	349	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	a0009	349	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR2_chr17_76069781_76082537	1/0	a0001	387	381	73	65	186	16	40	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0002	378	10	5	3	0	0	2	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0003	387	4	4	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0004	387	4	4	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0005	387	2	2	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0006	387	1	1	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0007	387	1	0	0	1	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0008	387	1	0	0	1	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	a0009	387	1	1	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR3_chr22_37818382_37830485	1/1	a0001	368	376	67	74	178	14	41	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	a0002	368	21	21	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	a0003	368	2	0	2	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	a0004	368	1	1	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	a0005	368	1	1	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	a0006	376	1	0	0	0	0	1	copy fasta	GALR3	chr22	37818382	37830485
GALT_chr9_34641675_34656035	1/1	a0001	379	390	93	71	176	12	36	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	a0002	379	24	2	5	1	4	12	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	a0003	379	1	1	0	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	a0004	379	1	0	0	1	0	0	copy fasta	GALT	chr9	34641675	34656035
GAL_chr11_68679544_68696175	1/1	a0001	123	391	91	78	168	14	38	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	a0002	123	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	a0003	123	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	a0004	123	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAMT_chr19_1392026_1406542	1/1	a0001	236	383	94	68	165	14	40	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	a0002	236	10	0	5	0	4	1	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	a0003	236	5	0	0	5	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	a0004	236	3	0	3	0	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	a0005	236	1	0	0	0	0	1	copy fasta	GAMT	chr19	1392026	1406542
GANAB_chr11_62619829_62651613	1/1	a0001	944	280	84	68	81	12	33	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0002	944	8	0	0	8	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0003	944	4	4	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0004	944	3	0	1	2	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0005	944	2	2	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613