JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GANAB_chr11_62619829_62651613	0/0	a0006	944	2	0	0	2	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0007	944	2	0	1	0	0	1	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0008	944	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0009	944	1	0	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0010	944	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0011	944	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0012	944	1	0	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0013	944	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	a0014	944	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANC_chr15_42268201_42358666	0/1	a0001	914	103	16	20	47	4	15	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0002	914	53	18	17	13	0	5	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0003	914	38	18	9	1	4	6	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0004	914	17	0	0	15	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0005	914	10	10	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0006	914	8	6	1	1	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0007	914	7	7	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0008	914	5	4	1	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0009	914	4	0	2	0	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0010	914	4	0	1	0	0	3	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0011	914	3	0	2	0	0	1	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0012	914	3	2	1	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0013	914	2	2	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0014	914	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	1/0	a0015	914	1	0	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0016	914	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0017	914	1	0	0	1	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	a0018	914	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GAN_chr16_81309962_81395809	1/1	a0001	597	382	89	66	175	10	40	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	a0002	597	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	a0003	597	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAP43_chr3_115618510_115726483	1/1	a0001	238	352	92	72	132	10	44	copy fasta	GAP43	chr3	115618510	115726483
GAPDHS_chr19_35528456_35550319	1/1	a0001	408	419	89	76	195	11	46	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	a0002	408	3	0	0	0	1	2	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	a0003	408	2	2	0	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	a0004	408	2	0	0	2	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	a0005	408	1	1	0	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	a0006	408	1	0	0	1	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDH_chr12_6529517_6543371	0/0	a0001	335	454	98	86	209	16	45	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	a0002	335	1	0	0	0	0	1	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	a0003	335	1	0	0	1	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPT_chr5_58486435_58502090	1/1	a0001	157	370	84	66	153	18	47	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	a0002	157	6	6	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	a0003	157	1	0	0	0	0	1	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	a0004	157	1	0	0	1	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPVD1_chr9_125256826_125372207	1/1	a0001	1460	332	66	53	166	12	33	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	a0002	1460	2	1	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	a0003	1460	2	0	0	0	0	2	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	a0004	1460	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	a0005	1460	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	a0006	1460	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207