JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GATM_chr15_45356124_45383544	0/0	a0001	423	185	80	37	54	3	11	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	1/1	a0002	423	111	8	25	38	11	27	copy fasta	GATM	chr15	45356124	45383544
GBA1_chr1_155229452_155246249	0/1	a0001	536	368	84	62	157	18	46	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0002	536	11	0	0	11	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0003	536	6	6	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0004	536	2	0	0	2	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0005	536	2	0	2	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0006	536	1	0	0	1	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0007	536	1	1	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0008	536	1	0	0	1	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	a0009	536	1	1	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA2_chr9_35731866_35754228	1/1	a0001	927	405	83	67	199	10	44	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0002	927	7	6	1	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0003	927	3	0	0	3	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0004	927	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0005	927	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0006	927	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0007	927	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	a0008	927	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBE1_chr3_81484703_81766645	0/1	a0001	702	172	51	35	70	4	11	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0002	702	84	17	18	40	2	7	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0003	702	35	9	9	14	1	2	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0004	702	3	0	0	3	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	1/0	a0005	702	2	0	0	0	1	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0006	702	1	0	1	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0007	702	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0008	702	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0009	632	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0010	702	1	0	1	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0011	702	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0012	702	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	a0013	702	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBF1_chr10_102240532_102387896	1/1	a0001	1860	300	81	53	122	9	33	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0002	1860	12	0	7	2	3	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0003	1860	5	0	0	5	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0004	1860	3	0	0	3	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0005	1860	2	0	0	2	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0006	1860	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0007	1860	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0008	1860	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0009	1860	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0010	1860	1	0	0	0	0	1	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0011	1860	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0012	1860	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	a0013	1860	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBGT1_chr9_133147948_133168914	1/0	a0001	347	245	57	52	91	16	28	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/1	a0002	347	155	19	28	92	0	15	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0003	347	5	0	0	5	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0004	120	5	2	2	0	1	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0005	347	4	3	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914