JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GCC2_chr2_108444206_108514415	0/0	a0009	1684	1	0	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0010	1684	1	0	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCDH_chr19_12886160_12904999	1/1	a0001	438	368	93	77	141	18	37	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	a0002	438	2	2	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	a0003	438	1	1	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	a0004	438	1	0	1	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	a0005	438	1	0	0	1	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	a0006	438	1	0	0	0	0	1	copy fasta	GCDH	chr19	12886160	12904999
GCFC2_chr2_75657705_75715915	1/1	a0001	781	166	13	29	100	7	15	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0002	781	142	24	26	68	5	19	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0003	781	34	32	2	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0004	781	32	11	5	10	2	4	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0005	781	5	1	2	0	2	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0006	781	4	4	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0007	781	4	4	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0008	781	4	0	0	4	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0009	781	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0010	781	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0011	781	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0012	781	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0013	781	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0014	781	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0015	781	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0016	781	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0017	781	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0018	781	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0019	781	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0020	781	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	a0021	781	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCGR_chr17_81799150_81819008	1/1	a0001	477	399	92	81	169	18	37	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0002	477	2	2	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0003	477	1	1	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0004	477	1	1	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0005	477	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0006	477	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0007	477	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0008	477	1	0	0	1	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	a0009	477	1	0	1	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCG_chr2_162137882_162157247	1/1	a0001	180	435	98	74	201	16	44	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	a0002	180	1	0	0	1	0	0	copy fasta	GCG	chr2	162137882	162157247
GCH1_chr14_54837017_54907826	1/1	a0001	250	344	87	66	136	14	39	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	a0002	250	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	a0003	250	1	0	0	0	0	1	copy fasta	GCH1	chr14	54837017	54907826
GCHFR_chr15_40759068_40772708	1/1	a0001	84	416	88	72	190	16	48	copy fasta	GCHFR	chr15	40759068	40772708
GCKR_chr2_27491839_27528684	0/1	a0001	625	208	69	42	57	7	32	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	1/0	a0002	625	94	9	18	54	5	7	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0003	625	5	0	0	4	0	1	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0004	625	3	0	0	3	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0005	625	2	2	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0006	625	2	0	1	1	0	0	copy fasta	GCKR	chr2	27491839	27528684