JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GCNA_chrX_71573437_71618583	0/0	a0002	691	6	4	2	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0003	681	4	3	1	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0004	701	4	1	0	3	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0005	691	3	0	1	1	0	1	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0006	702	2	2	0	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0007	691	2	0	0	2	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0008	691	1	0	0	0	0	1	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0009	691	1	0	1	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0010	187	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	a0011	691	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNT1_chr9_76454182_76512416	1/1	a0001	428	252	63	50	99	12	26	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	a0002	428	111	21	21	46	5	18	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	a0003	428	3	2	0	0	1	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	a0004	428	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	a0005	428	1	0	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	a0006	428	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	a0007	428	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT2_chr6_10516351_10634368	1/1	a0001	402	323	86	59	132	8	36	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	a0002	89	1	0	1	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10550809_10634368	1/1	a0001	400	338	81	64	143	12	36	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	a0002	400	3	3	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	a0003	400	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	a0004	73	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	a0005	400	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT3_chr15_59606783_59627723	1/0	a0001	438	418	85	75	194	16	47	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0002	438	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/1	a0003	70	1	0	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0004	438	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0005	438	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0006	438	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0007	438	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0008	438	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0009	438	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	a0010	438	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT4_chr5_75020346_75057558	1/1	a0001	453	215	25	37	105	14	32	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	a0002	453	133	37	27	55	2	12	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	a0003	453	33	27	2	4	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	a0004	453	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCSAML_chr1_247544134_247582690	1/1	a0001	135	410	96	72	174	18	48	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	a0002	135	2	0	2	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAM_chr3_112115839_112138248	1/1	a0001	178	414	97	74	175	18	48	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	a0002	178	5	0	0	5	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	a0003	178	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	a0004	178	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	a0005	178	1	1	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSH_chr16_81076945_81101395	0/1	a0001	173	227	42	48	98	13	25	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	1/0	a0002	173	106	33	11	52	1	8	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	a0003	173	18	12	0	6	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	a0004	173	1	0	0	0	0	1	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	a0005	173	1	1	0	0	0	0	copy fasta	GCSH	chr16	81076945	81101395