JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GDF1_chr19_18863545_18901158	0/0	a0003	373	22	3	1	16	1	1	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0004	372	2	2	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0005	373	2	0	2	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0006	372	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0007	367	1	0	0	1	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0008	372	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0009	372	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	a0010	372	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF2_chr10_47317454_47332588	1/1	a0001	429	411	90	74	186	16	43	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0002	429	3	3	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0003	429	2	0	0	2	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0004	429	2	0	0	2	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0005	418	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0006	429	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0007	429	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0008	429	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0009	429	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	a0010	429	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588
GDF3_chr12_7684784_7700775	1/0	a0001	364	376	79	70	181	13	32	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/1	a0002	364	72	16	8	28	2	17	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	a0003	364	16	0	0	15	1	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	a0004	364	1	0	0	0	0	1	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	a0005	372	1	0	0	1	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	a0006	364	1	0	0	1	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	a0007	364	1	1	0	0	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF5_chr20_35428347_35443228	0/1	a0001	501	196	41	38	83	6	27	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	1/0	a0002	501	141	43	22	48	8	19	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	a0003	501	14	11	3	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	a0004	501	5	0	0	5	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	a0005	501	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	a0006	501	1	0	1	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	a0007	501	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	a0008	501	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF6_chr8_96137333_96165806	1/1	a0001	455	364	92	72	147	12	39	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	a0002	455	2	0	0	2	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	a0003	455	1	0	0	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	a0004	455	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF7_chr2_20662144_20684243	0/0	a0001	453	299	57	64	139	13	26	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/1	a0002	456	59	9	12	29	1	7	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0003	453	29	0	5	18	2	4	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0004	457	13	0	0	12	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0005	454	9	2	1	1	0	5	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	1/0	a0006	450	8	7	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0007	452	5	4	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0008	452	5	5	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0009	449	4	3	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0010	459	2	2	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0011	454	2	2	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0012	458	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0013	455	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243