JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GEMIN4_chr17_739421_757264	0/0	a0027	1058	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0028	1058	1	0	0	0	1	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0029	1058	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0030	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0031	1058	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0032	1058	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0033	1058	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0034	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0035	1058	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0036	1058	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN5_chr5_154882411_154943211	0/1	a0001	1508	245	49	50	101	13	31	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0002	1508	39	9	13	10	3	4	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	1/0	a0003	1508	33	15	2	14	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0004	1508	6	6	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0005	1508	2	1	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0006	1508	2	2	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0007	1508	2	0	0	2	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0008	1508	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0009	1508	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0010	1508	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0011	1508	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0012	1508	1	0	1	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0013	1508	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0014	1508	1	0	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0015	1508	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	a0016	1508	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN6_chr2_38773210_38790002	1/1	a0001	167	328	94	61	122	14	35	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	a0002	167	83	0	9	63	2	9	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	a0003	167	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN7_chr19_45074260_45096518	1/0	a0001	131	418	100	84	173	14	46	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	a0002	126	1	0	0	1	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/1	a0003	131	1	0	0	0	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN8_chrX_14001726_14034892	1/1	a0001	242	251	71	53	89	9	27	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	a0002	242	19	0	2	16	0	1	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	a0003	242	2	0	0	0	0	2	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	a0004	186	1	0	0	1	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEM_chr8_94244253_94267319	1/1	a0001	296	328	67	64	153	9	33	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0002	296	38	8	2	15	5	8	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0003	296	20	16	3	1	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0004	296	18	0	4	13	0	1	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0005	296	2	0	0	0	0	2	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0006	296	2	2	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0007	296	1	0	0	1	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0008	296	1	0	0	1	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0009	296	1	1	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	a0010	296	1	0	1	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEN1_chr2_17749138_17793946	0/0	a0001	908	134	8	22	76	8	20	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0002	908	49	19	14	5	7	4	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0003	908	38	21	6	7	2	2	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0004	839	30	2	8	17	1	2	copy fasta	GEN1	chr2	17749138	17793946