JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GFM1_chr3_158639527_158700581	0/0	a0001	751	219	68	32	88	11	20	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	1/1	a0002	751	136	13	27	70	7	17	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0003	751	7	6	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0004	751	3	0	0	3	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0005	38	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0006	751	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0007	751	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0008	751	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0009	751	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0010	751	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	a0011	751	1	0	0	0	0	1	copy fasta	GFM1	chr3	158639527	158700581
GFM2_chr5_74716206_74772117	1/0	a0001	779	201	25	42	98	9	26	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0002	777	97	43	16	33	1	4	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/1	a0003	777	31	9	10	2	4	5	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0004	779	13	0	0	13	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0005	777	11	9	2	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0006	777	4	0	2	2	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0007	779	3	0	0	3	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0008	777	2	1	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0009	777	2	1	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0010	779	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0011	777	1	1	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0012	777	1	1	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0013	779	1	0	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0014	777	1	0	0	0	0	1	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0015	777	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0016	779	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	a0017	779	1	0	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFOD1_chr6_13352830_13492600	1/1	a0001	390	230	90	48	68	10	12	copy fasta	GFOD1	chr6	13352830	13492600
GFOD2_chr16_67669536_67724316	1/1	a0001	385	186	78	48	28	4	26	copy fasta	GFOD2	chr16	67669536	67724316
GFPT1_chr2_69314780_69392227	1/1	a0001	699	365	90	58	169	10	36	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	a0002	699	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT2_chr5_180295698_180358336	1/1	a0001	682	288	87	52	104	13	30	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	a0002	682	101	7	11	67	4	12	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	a0003	682	18	0	1	14	1	2	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	a0004	682	2	0	2	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	a0005	682	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	a0006	337	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFRA1_chr10_116051925_116278206	1/1	a0001	465	177	59	33	66	3	14	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	a0002	465	29	7	7	12	1	2	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	a0003	465	4	4	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	a0004	465	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	a0005	465	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	a0006	465	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	a0007	465	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA2_chr8_21685398_21793875	1/0	a0001	464	185	51	28	66	10	29	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/1	a0002	464	111	29	16	49	4	12	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	a0003	464	9	0	0	9	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	a0004	464	8	7	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	a0005	464	6	6	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875