JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GFRA2_chr8_21685398_21793875	0/0	a0006	464	1	0	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	a0007	464	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	a0008	464	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA3_chr5_138247380_138279621	1/1	a0001	400	372	84	66	164	16	40	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	a0002	400	1	0	0	1	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	a0003	400	1	0	0	1	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	a0004	400	1	1	0	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	a0005	400	1	1	0	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA4_chr20_3654248_3668399	1/1	a0001	269	433	95	68	204	18	46	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0002	269	9	1	8	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0003	269	2	0	0	2	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0004	269	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0005	269	1	0	0	0	0	1	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0006	269	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0007	269	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0008	269	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	a0009	269	1	0	0	0	0	1	copy fasta	GFRA4	chr20	3654248	3668399
GFRAL_chr6_55322469_55407493	0/1	a0001	394	191	32	42	100	6	10	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	a0002	394	81	19	12	33	2	15	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	a0003	394	67	22	7	24	2	12	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	1/0	a0004	394	45	20	6	13	4	1	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	a0005	394	1	1	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	a0006	394	1	0	1	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFUS_chr8_143607618_143622549	0/1	a0001	321	413	98	78	174	14	48	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	a0002	321	2	0	0	2	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFY_chr19_49420388_49433987	0/1	a0001	518	174	61	32	48	13	19	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	1/0	a0002	518	147	6	18	109	2	11	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0003	518	82	11	22	39	1	9	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0004	518	16	0	0	8	0	8	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0005	518	11	7	4	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0006	518	4	3	1	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0007	518	4	0	0	4	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0008	518	2	0	0	2	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0009	518	2	2	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0010	518	2	2	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0011	518	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0012	518	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0013	518	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0014	518	1	0	0	0	0	1	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0015	518	1	0	1	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	a0016	518	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GGA1_chr22_37603834_37638564	1/0	a0001	639	360	89	73	146	13	38	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	a0002	639	4	0	0	4	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/1	a0003	639	2	0	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	a0004	639	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	a0005	639	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	a0006	639	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	a0007	639	1	0	0	0	1	0	copy fasta	GGA1	chr22	37603834	37638564
GGA2_chr16_23458542_23515494	0/1	a0001	613	134	42	37	34	8	12	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	1/0	a0002	613	116	39	23	37	4	12	copy fasta	GGA2	chr16	23458542	23515494