JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GGA2_chr16_23458542_23515494	0/0	a0003	613	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	a0004	613	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	a0005	613	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	a0006	613	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA3_chr17_75231599_75266606	1/1	a0001	723	334	86	73	114	14	45	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0002	723	16	0	0	16	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0003	724	6	6	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0004	723	3	0	0	3	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0005	723	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0006	723	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0007	723	1	0	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0008	723	1	0	0	0	0	1	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	a0009	723	1	0	0	1	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGACT_chr13_100525180_100593789	1/1	a0001	153	368	86	52	178	16	34	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	a0002	153	6	0	0	6	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	a0003	153	2	0	2	0	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGCT_chr7_30491621_30509829	1/1	a0001	188	444	88	80	210	16	48	copy fasta	GGCT	chr7	30491621	30509829
GGCX_chr2_85539720_85566493	1/1	a0001	758	234	25	56	104	11	36	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	a0002	758	169	66	16	68	7	12	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	a0003	758	2	0	0	2	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	a0004	758	2	0	2	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	a0005	758	2	2	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	a0006	758	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGH_chr8_63010079_63043806	1/0	a0001	318	309	68	49	148	14	29	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/1	a0002	318	58	5	18	28	0	6	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0003	318	43	7	5	23	2	6	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0004	318	6	0	0	6	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0005	318	5	5	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0006	318	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0007	318	1	0	0	1	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0008	318	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0009	318	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	a0010	318	1	0	0	0	0	1	copy fasta	GGH	chr8	63010079	63043806
GGNBP2_chr17_36539919_36594848	0/1	a0001	697	355	86	63	159	12	34	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	a0002	697	1	0	1	0	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	a0003	697	1	0	0	1	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGN_chr19_38379267_38393034	1/1	a0001	652	223	52	51	81	10	27	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0002	652	51	1	10	31	1	8	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0003	660	50	5	5	40	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0004	652	18	0	1	17	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0005	660	14	0	0	14	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0006	660	6	6	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0007	660	4	1	2	0	0	1	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0008	652	3	0	1	0	2	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0009	652	3	3	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0010	660	3	3	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0011	652	2	0	1	0	1	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0012	652	2	0	2	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0013	662	2	2	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0014	660	2	2	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034