JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GGN_chr19_38379267_38393034	0/0	a0015	660	2	2	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0016	652	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0017	652	1	0	1	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0018	652	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0019	660	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0020	652	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0021	652	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	a0022	652	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGPS1_chr1_235323570_235349532	1/1	a0001	300	391	90	73	172	10	44	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	a0002	300	1	0	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGT1_chr22_24598193_24633996	1/0	a0001	569	252	24	46	138	14	29	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	a0002	569	170	65	32	57	4	12	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/1	a0003	569	2	0	0	0	0	1	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	a0004	569	1	0	0	1	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	a0005	569	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT5_chr22_24214660_24250082	1/1	a0001	586	268	41	41	138	14	32	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0002	586	105	26	21	46	2	10	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0003	586	19	17	2	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0004	586	6	0	4	0	2	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0005	586	5	5	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0006	586	3	2	0	0	0	1	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0007	586	2	2	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0008	586	2	0	0	0	0	2	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0009	586	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0010	586	1	0	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0011	586	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0012	586	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0013	586	1	0	0	0	0	1	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0014	586	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0015	586	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0016	586	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0017	586	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	a0018	586	1	0	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT6_chr17_4551927_4565577	0/1	a0001	499	335	67	61	163	16	27	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0002	499	59	1	8	35	1	14	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	1/0	a0003	499	36	28	6	0	1	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0004	499	13	0	2	7	0	4	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0005	499	3	0	3	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0006	499	2	2	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0007	499	2	0	2	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0008	499	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0009	499	1	0	0	0	0	1	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0010	499	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0011	499	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0012	499	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0013	499	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0014	165	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	a0015	499	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT7_chr20_34839720_34877856	1/1	a0001	662	332	83	52	143	18	34	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	a0002	662	14	10	4	0	0	0	copy fasta	GGT7	chr20	34839720	34877856