JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GHDC_chr17_42184087_42199494	0/0	a0005	530	1	0	0	1	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0006	530	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0007	492	1	0	1	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0008	530	1	0	0	1	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0009	530	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0010	530	1	0	1	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHITM_chr10_84134509_84158568	1/1	a0001	345	443	91	82	210	18	40	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	a0002	345	6	6	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	a0003	345	1	1	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHRHR_chr7_30958953_30984528	1/1	a0001	423	339	61	64	156	17	39	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0002	423	21	3	15	0	1	2	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0003	423	20	20	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0004	423	19	14	3	0	0	2	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0005	423	10	0	0	10	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0006	423	7	0	0	7	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0007	423	2	0	0	2	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0008	423	1	0	0	1	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0009	423	1	0	0	0	0	1	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0010	133	1	0	0	1	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	a0011	423	1	0	0	1	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRH_chr20_37246086_37266814	1/1	a0001	108	390	91	69	168	16	44	copy fasta	GHRH	chr20	37246086	37266814
GHRH_chr20_37246086_37266814	0/0	a0002	108	18	7	3	8	0	0	copy fasta	GHRH	chr20	37246086	37266814
GHRL_chr3_10280666_10297947	1/1	a0001	117	384	99	57	174	9	43	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	a0002	117	47	0	2	40	2	3	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	a0003	117	29	1	19	4	3	2	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	a0004	117	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	a0005	117	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHR_chr5_42418439_42726878	0/1	a0001	616	69	36	18	2	4	8	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	a0002	638	60	21	16	10	4	9	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	1/0	a0003	638	51	23	11	9	4	3	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	a0004	616	19	0	1	15	0	3	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	a0005	638	5	0	0	0	0	5	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	a0006	638	2	2	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	a0007	638	2	0	0	2	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	a0008	616	2	2	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHSR_chr3_172438291_172453456	1/1	a0001	366	441	89	81	207	14	48	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	a0002	366	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	a0003	366	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	a0004	366	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	a0005	366	1	0	0	1	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	a0006	366	1	0	1	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GID4_chr17_18034408_18073405	1/1	a0001	300	305	88	70	99	14	32	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	a0002	300	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	a0003	300	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	a0004	300	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID8_chr20_62933147_62953475	1/1	a0001	228	443	98	82	204	14	43	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	a0002	228	1	0	0	0	0	1	copy fasta	GID8	chr20	62933147	62953475
GIGYF1_chr7_100674507_100699250	1/1	a0001	1035	273	77	49	92	11	42	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0002	1035	106	3	16	78	1	8	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0003	1035	4	0	0	4	0	0	copy fasta	GIGYF1	chr7	100674507	100699250