JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GIGYF1_chr7_100674507_100699250	0/0	a0004	1035	3	3	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0005	1034	3	0	0	3	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0006	1035	2	2	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0007	1035	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0008	1035	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0009	1035	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0010	1035	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0011	1035	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0012	1030	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	a0013	1035	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF2_chr2_232692331_232865605	0/1	a0001	1298	187	51	39	77	6	13	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	1/0	a0002	1299	124	31	24	46	2	20	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0003	1300	50	1	3	38	2	6	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0004	1294	2	0	2	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0005	1292	2	0	1	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0006	1299	2	2	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0007	1299	2	0	0	2	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0008	1298	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0009	1298	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0010	1299	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0011	1300	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0012	1291	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0013	1299	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	a0014	1298	1	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIMAP1_chr7_150711613_150729284	1/1	a0001	306	422	91	72	199	12	46	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	a0002	306	5	5	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	a0003	306	3	3	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	a0004	306	3	0	0	3	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	a0005	306	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP2_chr7_150680706_150698641	1/1	a0001	337	317	49	55	171	12	28	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0002	337	121	40	12	56	4	9	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0003	337	6	5	1	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0004	337	2	0	0	0	0	2	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0005	337	2	2	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0006	337	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0007	337	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0008	337	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0009	337	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0010	337	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0011	337	1	0	0	1	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0012	337	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	a0013	337	1	0	0	0	0	1	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP4_chr7_150562390_150578953	1/1	a0001	329	380	86	62	169	16	45	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	a0002	329	70	6	13	50	0	1	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	a0003	329	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	a0004	329	1	0	1	0	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	a0005	329	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	a0006	329	1	0	0	1	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP5_chr7_150732418_150748646	1/1	a0001	307	417	96	70	193	12	44	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	a0002	307	2	0	0	2	0	0	copy fasta	GIMAP5	chr7	150732418	150748646