JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GIMAP5_chr7_150732418_150748646	0/0	a0003	307	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	a0004	307	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	a0005	307	1	0	0	1	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP6_chr7_150620375_150637385	1/0	a0001	292	323	63	47	165	9	38	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/1	a0002	292	85	7	26	38	7	6	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0003	292	17	16	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0004	292	9	8	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0005	292	6	0	3	3	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0006	292	3	1	2	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0007	292	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0008	292	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	a0009	292	1	1	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP7_chr7_150509872_150526073	1/0	a0001	300	389	89	51	196	10	42	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/1	a0002	300	68	2	18	34	6	7	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0003	300	2	2	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0004	300	1	0	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0005	300	1	0	0	0	0	1	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0006	300	1	0	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0007	300	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0008	300	1	1	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0009	300	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	a0010	300	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP8_chr7_150445630_150484393	1/1	a0001	665	348	84	61	149	12	40	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0002	665	10	0	0	10	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0003	665	3	3	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0004	665	2	2	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0005	665	2	0	0	2	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0006	665	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0007	665	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0008	387	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0009	665	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0010	665	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0011	665	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	a0012	665	1	0	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMD1_chr4_106352392_106373778	1/1	a0001	217	331	64	64	160	14	27	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	a0002	217	91	15	10	49	1	16	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	a0003	217	15	13	2	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	a0004	217	10	5	3	0	1	1	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	a0005	217	3	0	0	3	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	a0006	217	2	1	1	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIN1_chr5_103081000_103125138	1/0	a0001	522	196	71	36	67	10	11	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/1	a0002	522	118	16	18	70	4	9	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	a0003	522	4	4	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	a0004	522	3	3	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	a0005	522	1	0	0	1	0	0	copy fasta	GIN1	chr5	103081000	103125138
GINM1_chr6_149561375_149596748	1/1	a0001	330	368	86	73	152	13	42	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	a0002	330	7	7	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	a0003	330	3	0	2	0	1	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	a0004	330	1	0	1	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	a0005	330	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748