JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GJE1_chr6_142127925_142140358	0/0	a0003	205	4	4	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	a0004	205	4	0	4	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	a0005	205	3	3	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	a0006	205	1	1	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	a0007	205	1	0	0	1	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	a0008	205	1	0	0	0	0	1	copy fasta	GJE1	chr6	142127925	142140358
GK2_chr4_79401361_79413228	1/1	a0001	553	399	94	70	177	16	40	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	a0002	553	1	1	0	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	a0003	485	1	0	0	1	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	a0004	553	1	1	0	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK3_chr4_165272807_165284704	1/1	a0001	553	217	25	42	112	6	30	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0002	553	43	31	0	12	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0003	553	39	18	2	18	0	1	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0004	553	37	11	16	0	4	6	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0005	553	30	5	3	19	2	1	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0006	553	4	4	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0007	553	2	2	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0008	553	2	1	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0009	190	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0010	553	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0011	553	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0012	553	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0013	404	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0014	553	1	1	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0015	553	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0016	553	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0017	553	1	0	1	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	a0018	553	1	0	0	1	0	0	copy fasta	GK3	chr4	165272807	165284704
GK5_chr3_142152527_142230585	1/1	a0001	529	270	87	60	73	14	34	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	a0002	529	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	a0003	529	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GKAP1_chr9_83734425_83822769	1/1	a0001	366	336	80	50	146	16	42	copy fasta	GKAP1	chr9	83734425	83822769
GKN1_chr2_68969636_68985976	1/1	a0001	185	462	100	78	224	16	42	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	a0002	185	2	0	0	2	0	0	copy fasta	GKN1	chr2	68969636	68985976
GKN2_chr2_68940232_68957893	1/1	a0001	184	289	41	56	145	14	31	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0002	184	134	29	10	79	2	14	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0003	184	20	19	1	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0004	184	8	0	0	8	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0005	184	6	6	0	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0006	184	4	1	0	0	0	3	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0007	184	4	4	0	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GKN2_chr2_68940232_68957893	0/0	a0008	184	1	0	1	0	0	0	copy fasta	GKN2	chr2	68940232	68957893
GK_chrX_30648423_30736462	1/1	a0001	559	286	72	55	118	11	28	copy fasta	GK	chrX	30648423	30736462
GLA_chrX_101392803_101412925	1/1	a0001	429	316	78	51	142	11	32	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	a0002	373	1	0	0	1	0	0	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	a0003	429	1	0	0	1	0	0	copy fasta	GLA	chrX	101392803	101412925
GLB1L2_chr11_134326988_134381324	1/0	a0001	636	385	88	66	170	17	43	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0002	636	8	7	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0003	636	5	0	5	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0004	636	2	2	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324