JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLIPR2_chr9_36131733_36168906	1/1	a0001	154	419	87	80	188	16	46	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	a0002	154	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIS1_chr1_53501239_53744164	0/1	a0001	795	69	12	17	24	5	10	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	1/0	a0002	795	49	8	5	34	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0003	795	31	4	4	14	3	6	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0004	795	20	17	3	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0005	795	10	2	0	6	1	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0006	795	9	9	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0007	795	8	7	0	0	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0008	795	5	5	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0009	795	5	4	1	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0010	795	4	4	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0011	795	3	2	1	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0012	795	2	0	0	0	1	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0013	795	2	0	2	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0014	795	2	2	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0015	795	1	0	0	0	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0016	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0017	795	1	0	0	0	0	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0018	795	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0019	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0020	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0021	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0022	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0023	795	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0024	795	1	0	1	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0025	795	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0026	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0027	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0028	795	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0029	795	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0030	795	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	a0031	795	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS2_chr16_4311067_4344595	0/1	a0001	524	352	74	72	147	13	45	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0002	524	19	15	2	0	2	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0003	524	8	0	0	8	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0004	524	5	5	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0005	524	3	1	0	2	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0006	524	2	0	0	0	1	1	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0007	524	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0008	524	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0009	524	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0010	524	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0011	524	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	a0012	524	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS3_chr9_3819127_4305068	0/0	a0001	930	102	31	25	33	3	10	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0002	930	53	24	11	12	0	6	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0003	930	4	2	2	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0004	930	3	0	0	1	1	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0005	930	3	2	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068