JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLTPD2_chr17_4783964_4795589	0/0	a0006	291	1	1	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTP_chr12_109845945_109885541	1/1	a0001	209	321	90	66	115	16	32	copy fasta	GLTP	chr12	109845945	109885541
GLTP_chr12_109845945_109885541	0/0	a0002	209	1	0	0	1	0	0	copy fasta	GLTP	chr12	109845945	109885541
GLUD1_chr10_87045202_87099843	1/1	a0001	558	330	85	78	124	8	33	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	a0002	558	1	0	0	0	0	1	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	a0003	547	1	0	0	1	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	a0004	558	1	0	0	1	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD1_chr10_87045202_87099843	0/0	a0005	558	1	1	0	0	0	0	copy fasta	GLUD1	chr10	87045202	87099843
GLUD2_chrX_121042610_121055094	1/1	a0001	558	293	66	51	139	10	25	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	a0002	558	10	5	1	1	1	2	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	a0003	558	8	6	2	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	a0004	154	1	0	0	1	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	a0005	558	1	1	0	0	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUD2_chrX_121042610_121055094	0/0	a0006	558	1	0	0	1	0	0	copy fasta	GLUD2	chrX	121042610	121055094
GLUL_chr1_182373098_182396790	1/1	a0001	373	398	89	71	178	14	44	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	a0002	373	1	0	1	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLUL_chr1_182373098_182396790	0/0	a0003	373	1	1	0	0	0	0	copy fasta	GLUL	chr1	182373098	182396790
GLYATL1B_chr11_59081307_59099786	1/1	a0001	302	422	84	82	204	16	34	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	a0002	302	3	0	3	0	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	a0003	302	3	3	0	0	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	a0004	302	3	0	1	0	0	2	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	a0005	302	2	0	0	0	0	2	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	a0006	302	2	0	0	2	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1B_chr11_59081307_59099786	0/0	a0007	302	1	1	0	0	0	0	copy fasta	GLYATL1B	chr11	59081307	59099786
GLYATL1_chr11_58934488_58961406	1/1	a0001	302	419	93	76	197	10	41	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	a0002	302	3	0	0	0	0	3	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	a0003	302	1	1	0	0	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL1_chr11_58934488_58961406	0/0	a0004	302	1	0	0	1	0	0	copy fasta	GLYATL1	chr11	58934488	58961406
GLYATL2_chr11_58829065_58849704	1/1	a0001	294	202	64	35	73	5	23	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0002	294	164	20	25	102	1	16	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0003	294	3	3	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0004	294	2	0	1	0	0	1	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0005	294	2	2	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0006	294	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0007	294	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0008	294	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0009	294	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0010	294	1	1	0	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0011	294	1	0	0	1	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL2_chr11_58829065_58849704	0/0	a0012	294	1	0	1	0	0	0	copy fasta	GLYATL2	chr11	58829065	58849704
GLYATL3_chr6_49494923_49533078	0/0	a0000	0	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	1/0	a0001	288	99	60	13	17	1	7	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0002	288	98	29	11	39	8	11	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0003	288	90	0	22	62	1	5	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/1	a0004	288	61	1	13	31	5	10	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0005	288	14	0	0	13	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0006	288	4	4	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0007	288	3	0	2	0	1	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0008	288	2	0	0	2	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0009	288	2	0	0	2	0	0	copy fasta	GLYATL3	chr6	49494923	49533078