JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA1_chr9_124873275_124946083	0/0	a0003	767	11	9	2	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	1/0	a0004	767	5	3	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0005	767	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0006	767	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0007	767	1	0	0	0	0	1	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0008	767	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0009	767	1	0	0	1	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0010	767	1	0	1	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0011	767	1	1	0	0	0	0	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/0	a0012	767	1	0	0	0	0	1	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA2_chr9_128250829_128281007	1/1	a0001	1029	221	23	34	121	11	30	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0002	1028	58	0	10	40	0	8	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0003	1028	29	3	2	21	0	3	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0004	1027	19	19	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0005	1028	16	16	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0006	1028	13	10	3	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0007	1029	4	4	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0008	1029	4	3	1	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0009	1027	3	3	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0010	1029	3	0	1	2	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0011	1029	3	0	0	3	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0012	1029	2	0	0	2	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0013	1028	2	2	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0014	1029	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0015	1029	1	0	0	0	0	1	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0016	1029	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0017	1028	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0018	1028	1	0	0	0	1	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0019	1029	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0020	1029	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0021	1029	1	0	1	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0022	1028	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0023	1029	1	0	0	1	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA2_chr9_128250829_128281007	0/0	a0024	1028	1	1	0	0	0	0	copy fasta	GOLGA2	chr9	128250829	128281007
GOLGA3_chr12_132763914_132833869	1/1	a0001	1498	148	36	25	65	8	12	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0002	1498	78	16	15	33	0	14	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0003	1498	26	0	2	18	1	5	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0004	1498	16	1	6	3	3	3	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0005	1498	13	13	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0006	1498	6	5	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0007	1498	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0008	1498	2	0	0	0	0	2	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0009	1498	2	2	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0010	1498	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0011	1498	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0012	1498	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0013	1498	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0014	1498	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0015	1498	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0016	1498	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869