JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6C_chr15_75253334_75278455	0/0	a0006	693	6	0	3	2	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0007	693	6	0	0	6	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0008	693	4	0	1	2	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0009	693	4	0	0	4	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0010	693	3	2	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0011	693	2	1	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0012	693	2	0	0	2	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0013	693	2	1	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0014	693	2	2	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0015	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0016	693	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0017	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0018	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0019	693	1	0	0	0	0	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0020	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0021	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0022	693	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0023	693	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0024	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0025	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0026	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0027	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0028	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0029	199	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0030	693	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0031	693	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0032	693	1	0	1	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0033	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0034	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0035	693	1	0	0	1	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0036	693	1	1	0	0	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6D_chr15_75277835_75300530	1/1	a0001	693	128	20	21	61	7	17	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0002	693	30	3	1	20	1	5	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0003	693	18	9	5	4	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0004	693	10	1	4	0	1	4	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0005	693	6	1	0	3	0	2	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0006	693	4	0	0	4	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0007	693	3	3	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0008	228	3	0	0	3	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0009	693	3	2	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0010	693	3	0	0	3	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0011	693	3	0	2	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0012	693	2	0	2	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0013	693	2	0	0	2	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0014	693	2	0	1	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0015	693	2	1	0	0	0	1	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0016	700	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0017	693	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0018	693	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0019	693	1	0	0	0	1	0	copy fasta	GOLGA6D	chr15	75277835	75300530