JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6D_chr15_75277835_75300530	0/0	a0020	693	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0021	693	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0022	693	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0023	693	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0024	693	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0025	693	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0026	693	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0027	693	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0028	579	1	0	0	1	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0029	693	1	1	0	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6D_chr15_75277835_75300530	0/0	a0030	117	1	0	1	0	0	0	copy fasta	GOLGA6D	chr15	75277835	75300530
GOLGA6L10_chr15_82334993_82354475	0/0	a0001	480	62	24	7	26	2	3	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0002	536	57	3	16	33	2	3	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0003	536	48	8	8	23	5	4	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/1	a0004	522	14	3	7	0	2	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0005	530	12	0	0	0	0	12	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0006	530	8	0	0	8	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0007	536	7	0	3	4	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0008	522	7	4	2	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0009	453	6	1	0	2	1	2	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0010	479	5	0	3	0	0	2	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0011	345	5	5	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0012	550	5	0	2	3	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0013	550	4	0	3	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0014	459	4	4	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0015	522	3	0	2	0	1	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0016	543	3	1	2	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0017	522	3	3	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0018	515	2	0	2	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0019	543	2	0	2	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0020	529	2	0	2	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0021	536	2	2	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0022	529	2	2	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0023	564	2	2	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0024	431	2	2	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0025	536	2	0	0	0	2	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0026	451	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0027	480	1	0	0	0	1	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0028	480	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0029	480	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0030	480	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0031	529	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0032	536	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0033	544	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0034	517	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0035	536	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0036	550	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0037	536	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0038	550	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0039	529	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475