JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L10_chr15_82334993_82354475	0/0	a0040	536	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0041	494	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0042	529	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0043	536	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0044	529	1	0	0	0	0	1	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0045	459	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0046	447	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0047	522	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0048	480	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0049	474	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0050	494	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0051	517	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0052	515	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0053	303	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0054	550	1	0	1	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0055	529	1	1	0	0	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0056	536	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L10_chr15_82334993_82354475	0/0	a0057	543	1	0	0	1	0	0	copy fasta	GOLGA6L10	chr15	82334993	82354475
GOLGA6L1_chr15_23122066_23141822	0/0	a0001	664	67	13	8	30	4	12	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0002	685	18	1	6	10	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0003	662	17	2	7	0	2	6	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0004	660	6	0	5	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0005	664	4	0	0	1	0	3	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0006	648	4	4	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0007	668	3	1	2	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0008	682	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0009	656	3	1	2	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0010	648	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0011	656	3	3	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0012	664	3	0	0	2	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0013	688	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0014	650	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0015	649	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0016	654	2	0	1	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0017	662	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0018	772	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0019	663	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0020	656	2	2	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0021	657	2	0	0	0	0	2	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0022	650	2	1	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0023	653	2	0	2	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0024	706	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0025	710	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0026	676	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0027	682	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0028	650	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0029	657	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0030	663	1	0	0	0	1	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0031	31	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0032	58	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822