JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L1_chr15_23122066_23141822	0/0	a0033	31	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0034	58	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0035	58	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0036	657	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0037	666	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0038	672	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0039	690	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0040	700	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0041	678	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0042	703	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0043	674	1	0	0	0	1	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0044	666	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0045	115	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0046	784	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0047	768	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0048	653	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0049	668	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0050	675	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0051	662	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0052	647	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0053	606	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0054	772	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0055	693	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0056	678	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0057	656	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0058	665	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0059	772	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0060	648	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0061	642	1	0	1	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0062	664	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0063	637	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0064	653	1	0	0	0	0	1	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0065	644	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0066	658	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0067	636	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0068	31	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0069	58	1	0	0	1	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0070	64	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L1_chr15_23122066_23141822	0/0	a0071	656	1	1	0	0	0	0	copy fasta	GOLGA6L1	chr15	23122066	23141822
GOLGA6L22_chr15_22453903_22474226	0/0	a0000	0	31	1	0	29	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/1	a0001	860	37	4	13	13	0	6	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0002	866	29	1	12	12	1	3	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0003	859	21	0	0	19	0	2	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0004	853	18	0	3	14	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0005	866	14	0	0	14	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0006	872	10	2	8	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0007	872	6	0	0	6	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	1/0	a0008	854	6	0	0	2	1	2	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0009	860	4	0	0	2	0	2	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0010	807	3	3	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226