JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L26_chr15_23319535_23339196	0/0	a0047	651	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0048	651	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0049	644	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0050	651	1	0	1	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0051	68	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0052	679	1	0	0	0	0	1	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0053	640	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0054	662	1	0	0	1	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0055	655	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0056	651	1	1	0	0	0	0	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L26_chr15_23319535_23339196	0/0	a0057	73	1	0	0	0	0	1	copy fasta	GOLGA6L26	chr15	23319535	23339196
GOLGA6L2_chr15_23434038_23452243	0/0	a0000	0	89	38	7	33	4	7	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/1	a0001	872	235	24	67	103	10	30	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0002	865	14	14	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0003	872	11	0	0	11	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0004	872	9	1	2	0	2	4	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0005	899	7	7	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0006	104	4	4	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0007	872	2	0	2	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0008	872	2	2	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0009	865	2	0	0	0	0	2	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0010	872	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0011	1169	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0012	75	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0013	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0014	338	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0015	866	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0016	872	1	0	0	0	0	1	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0017	872	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0018	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0019	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0020	879	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0021	872	1	0	1	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0022	899	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0023	878	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0024	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0025	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0026	865	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0027	865	1	1	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0028	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	1/0	a0029	909	1	0	0	0	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L2_chr15_23434038_23452243	0/0	a0030	872	1	0	0	1	0	0	copy fasta	GOLGA6L2	chr15	23434038	23452243
GOLGA6L4_chr15_84230773_84250358	0/0	a0001	581	81	32	4	32	1	12	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0002	581	24	2	0	18	0	4	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0003	616	17	0	0	17	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0004	609	13	3	4	4	2	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0005	581	11	7	0	2	1	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0006	609	8	5	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0007	468	8	5	3	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0008	581	7	0	0	7	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358