JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L6_chr15_20526856_20546800	0/0	a0005	750	7	5	1	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0006	467	7	3	1	2	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0007	693	7	0	7	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0008	728	6	0	0	5	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0009	724	5	0	1	4	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0010	439	4	0	3	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0011	376	4	0	3	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0012	750	3	3	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0013	716	3	0	1	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0014	445	3	0	1	0	2	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0015	445	2	2	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0016	730	2	0	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0017	473	2	0	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0018	486	2	1	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0019	597	2	0	2	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0020	693	2	2	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0021	718	2	0	0	2	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0022	451	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0023	742	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0024	756	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0025	734	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/1	a0026	730	1	0	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0027	603	1	0	0	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0028	744	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0029	473	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0030	473	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0031	473	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0032	459	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0033	717	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0034	710	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0035	724	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0036	473	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0037	724	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0038	724	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0039	725	1	1	0	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0040	467	1	0	1	0	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0041	716	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0042	716	1	0	0	1	0	0	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0043	473	1	0	0	0	0	1	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L7_chr15_28836832_28853644	0/1	a0001	616	223	18	54	113	13	24	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0002	609	46	6	7	22	2	9	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0003	588	40	1	12	25	0	2	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0004	584	23	18	1	2	0	2	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0005	581	8	7	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0006	609	6	0	4	2	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0007	588	5	0	0	5	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0008	567	4	4	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0009	588	4	4	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0010	581	4	4	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0011	616	4	2	0	2	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644