JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L7_chr15_28836832_28853644	0/0	a0012	623	3	0	0	0	0	3	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0013	567	3	3	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0014	588	3	3	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0015	595	3	2	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	1/0	a0016	622	2	0	0	0	1	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0017	609	2	0	1	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0018	567	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0019	588	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0020	602	2	2	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0021	616	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0022	581	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0023	616	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0024	588	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0025	521	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0026	616	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0027	616	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0028	616	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0029	616	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0030	616	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0031	623	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0032	584	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0033	602	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0034	581	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0035	588	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0036	602	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0037	602	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0038	567	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0039	588	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0040	595	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0041	595	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0042	588	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0043	588	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0044	609	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0045	609	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0046	637	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0047	335	1	0	0	1	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0048	637	1	0	1	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0049	577	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0050	584	1	0	0	0	0	1	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0051	588	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0052	567	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L7_chr15_28836832_28853644	0/0	a0053	616	1	1	0	0	0	0	copy fasta	GOLGA6L7	chr15	28836832	28853644
GOLGA6L9_chr15_82424816_82444153	0/0	a0001	432	161	4	34	107	4	12	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0002	432	100	42	7	43	3	5	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0003	438	90	11	12	46	6	15	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/1	a0004	432	19	2	11	0	3	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0005	432	11	3	5	2	1	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0006	438	8	0	0	0	0	8	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0007	432	8	0	1	7	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0008	438	8	7	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153