JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GP1BB_chr22_19718539_19729771	0/0	a0002	206	1	0	0	1	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	a0003	206	1	1	0	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP1BB_chr22_19718539_19729771	0/0	a0004	206	1	0	1	0	0	0	copy fasta	GP1BB	chr22	19718539	19729771
GP2_chr16_20304574_20332513	1/1	a0001	534	367	88	77	140	17	43	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0002	534	18	0	0	15	0	3	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0003	534	2	0	0	2	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0004	534	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0005	534	1	0	0	0	1	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0006	534	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0007	534	1	0	0	1	0	0	copy fasta	GP2	chr16	20304574	20332513
GP2_chr16_20304574_20332513	0/0	a0008	534	1	0	1	0	0	0	copy fasta	GP2	chr16	20304574	20332513
GP5_chr3_194389821_194404266	1/1	a0001	560	358	90	59	165	4	38	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	a0002	560	16	2	0	14	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	a0003	560	7	7	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	a0004	560	1	1	0	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	a0005	560	1	0	1	0	0	0	copy fasta	GP5	chr3	194389821	194404266
GP5_chr3_194389821_194404266	0/0	a0006	560	1	0	0	1	0	0	copy fasta	GP5	chr3	194389821	194404266
GP6_chr19_55008705_55043264	0/1	a0001	620	153	26	15	92	5	14	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0002	620	120	7	39	46	10	18	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0003	463	57	6	8	39	0	4	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0004	620	36	13	8	4	3	8	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0005	620	19	7	5	5	0	2	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0006	620	14	12	2	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0007	620	6	6	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0008	428	5	5	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0009	620	4	4	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0010	620	4	1	2	0	0	1	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0011	620	3	3	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0012	620	3	3	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0013	620	2	0	2	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0014	620	2	1	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0015	188	1	0	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0016	620	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0017	620	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0018	620	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0019	463	1	0	1	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0020	620	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0021	620	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0022	620	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0023	620	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0024	620	1	1	0	0	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0025	620	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0026	620	1	0	0	1	0	0	copy fasta	GP6	chr19	55008705	55043264
GP6_chr19_55008705_55043264	0/0	a0027	620	1	0	0	0	0	1	copy fasta	GP6	chr19	55008705	55043264
GP9_chr3_129055779_129067406	1/1	a0001	177	341	86	71	131	12	39	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	a0002	177	49	0	5	41	0	3	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	a0003	177	1	0	1	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GP9_chr3_129055779_129067406	0/0	a0004	177	1	0	1	0	0	0	copy fasta	GP9	chr3	129055779	129067406
GPA33_chr1_167047836_167095377	1/1	a0001	319	313	83	66	109	14	39	copy fasta	GPA33	chr1	167047836	167095377
GPA33_chr1_167047836_167095377	0/0	a0002	319	44	1	8	30	2	3	copy fasta	GPA33	chr1	167047836	167095377