JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GRXCR1_chr4_42887713_43035658	0/1	a0003	290	53	21	5	25	0	1	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	a0004	290	1	0	0	1	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	a0005	290	1	0	0	0	0	1	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR2_chr5_145853521_145878014	0/1	a0001	248	323	72	59	146	8	37	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	1/0	a0002	248	128	13	25	70	9	10	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	a0003	248	17	14	1	0	1	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	a0004	248	1	1	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	a0005	248	1	0	1	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GSAP_chr7_77305751_77421349	0/1	a0001	854	208	35	45	110	6	11	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0002	854	63	15	5	25	4	14	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0003	854	27	14	4	4	3	2	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0004	854	20	2	2	13	0	3	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	1/0	a0005	854	11	0	3	0	5	2	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0006	854	9	6	2	0	0	1	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0007	854	5	5	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0008	854	2	0	2	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0009	854	2	1	0	1	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0010	854	1	0	0	1	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0011	854	1	0	0	0	0	1	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0012	854	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0013	854	1	0	1	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	a0014	854	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSC2_chr22_19141993_19155292	1/0	a0001	205	278	53	72	104	13	35	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/1	a0002	205	190	46	16	109	5	13	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	a0003	205	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	a0004	205	1	0	0	1	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC_chr14_94763223_94775113	1/1	a0001	257	442	86	86	206	18	44	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	a0002	257	9	9	0	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	a0003	257	1	1	0	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	a0004	257	1	0	0	1	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	a0005	257	1	0	0	1	0	0	copy fasta	GSC	chr14	94763223	94775113
GSDMA_chr17_39958004_39982768	0/1	a0001	445	114	12	24	62	5	10	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0002	445	97	15	22	42	2	16	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0003	445	88	45	7	24	4	8	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0004	445	44	2	9	24	1	8	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0005	445	32	4	3	24	0	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0006	445	17	10	0	5	0	2	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0007	445	13	0	7	5	1	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0008	445	10	2	3	2	2	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	1/0	a0009	445	5	1	1	0	1	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0010	445	4	0	1	3	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0011	445	3	3	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0012	445	2	2	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0013	445	2	2	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0014	445	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0015	445	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0016	445	1	0	0	0	0	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0017	445	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0018	445	1	0	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	a0019	445	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768