JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GSDME_chr7_24693355_24762464	0/0	a0009	496	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	a0010	496	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSE1_chr16_85608322_85681200	1/1	a0001	1217	202	47	48	61	9	35	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0002	1215	40	18	9	3	2	8	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0003	349	6	1	2	1	0	2	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0004	1217	6	6	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0005	1213	3	1	0	2	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0006	1217	3	2	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0007	1215	2	1	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0008	1217	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0009	1217	2	0	2	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0010	1217	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0011	1217	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0012	351	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0013	355	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0014	1217	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0015	1217	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0016	488	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0017	1215	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0018	1215	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0019	1215	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0020	1215	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0021	1217	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0022	1217	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0023	1217	1	0	0	0	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0024	1217	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0025	1217	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0026	1217	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0027	1221	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0028	1225	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0029	1215	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0030	1215	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0031	1217	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	a0032	1215	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSG1L2_chr17_9795608_9827079	1/1	a0001	293	404	79	60	214	11	38	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0002	293	31	2	15	0	7	7	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0003	293	23	10	2	11	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0004	293	6	1	2	0	0	3	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0005	293	4	4	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0006	293	1	0	0	0	0	1	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0007	293	1	0	1	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0008	153	1	0	0	1	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0009	293	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0010	293	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	a0011	293	1	0	0	0	0	1	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L_chr16_27782528_28068714	1/1	a0001	331	235	82	44	65	6	36	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	a0002	331	5	0	0	5	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1_chr12_13078532_13108667	1/1	a0001	362	387	88	59	180	15	43	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0002	362	43	0	10	32	1	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	a0003	362	6	6	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667