JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GSR_chr8_30673066_30732846	0/0	a0002	522	18	10	0	5	0	3	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	a0003	522	4	4	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	a0004	522	4	2	2	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	a0005	522	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	a0006	522	1	0	0	0	1	0	copy fasta	GSR	chr8	30673066	30732846
GSS_chr20_34923432_34960806	1/1	a0001	474	348	88	55	156	16	31	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	a0002	474	1	1	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	a0003	474	1	1	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	a0004	474	1	0	1	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	a0005	474	1	0	0	0	0	1	copy fasta	GSS	chr20	34923432	34960806
GSTA1_chr6_52786371_52808816	1/1	a0001	222	430	93	75	203	12	45	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	a0002	222	1	0	0	0	0	1	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	a0003	222	1	1	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	a0004	222	1	0	0	1	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	a0005	222	1	0	1	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	a0006	222	1	1	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	a0007	222	1	1	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA2_chr6_52745087_52768475	0/0	a0001	222	248	35	52	124	12	25	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	a0002	222	122	59	10	47	3	3	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	a0003	222	42	0	2	31	0	9	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	1/1	a0004	222	25	0	12	0	2	9	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	a0005	222	1	0	0	0	1	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	a0006	222	1	1	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	a0007	222	1	1	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA3_chr6_52891646_52914698	1/1	a0001	222	401	77	74	194	16	38	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	a0002	222	10	10	0	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	a0003	222	5	5	0	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	a0004	222	4	0	0	4	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	a0005	222	2	0	0	0	0	2	copy fasta	GSTA3	chr6	52891646	52914698
GSTA4_chr6_52972953_53000284	1/1	a0001	222	321	92	56	127	14	30	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	a0002	222	3	0	0	3	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA5_chr6_52826848_52845813	0/1	a0001	222	368	81	75	158	14	39	copy fasta	GSTA5	chr6	52826848	52845813
GSTA5_chr6_52826848_52845813	1/0	a0002	222	61	17	5	29	0	9	copy fasta	GSTA5	chr6	52826848	52845813
GSTA5_chr6_52826848_52845813	0/0	a0003	222	1	0	0	1	0	0	copy fasta	GSTA5	chr6	52826848	52845813
GSTCD_chr4_105703784_105852725	1/1	a0001	633	183	72	40	44	11	14	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	a0002	633	2	2	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	a0003	633	1	0	0	0	1	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTK1_chr7_143258441_143274115	1/1	a0001	226	380	96	72	162	11	37	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	a0002	226	1	0	0	0	0	1	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	a0003	226	1	0	0	0	1	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTM1_chr1_109682817_109698745	0/0	a0000	0	122	28	25	57	5	7	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	a0001	218	83	40	19	17	2	5	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	a0002	218	39	0	6	30	0	3	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	a0003	218	2	2	0	0	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	a0004	218	2	1	0	0	0	1	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	a0005	26	1	0	0	1	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM2_chr1_109663057_109680286	1/1	a0001	218	354	94	66	136	16	40	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	a0002	218	1	0	0	1	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	a0003	216	1	0	0	1	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM3_chr1_109728937_109746038	1/0	a0001	225	223	85	41	62	9	25	copy fasta	GSTM3	chr1	109728937	109746038