JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GSTM3_chr1_109728937_109746038	0/1	a0002	225	175	6	23	121	7	17	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	a0003	225	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	a0004	219	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM4_chr1_109651099_109666700	1/1	a0001	218	343	76	71	137	14	43	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	a0002	218	17	15	2	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	a0003	218	1	0	0	0	0	1	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	a0004	135	1	0	0	1	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	a0005	218	1	0	1	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	a0006	218	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM5_chr1_109707251_109723268	1/1	a0001	218	318	59	58	149	13	37	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0002	218	44	33	4	0	3	4	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0003	218	15	0	0	15	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0004	218	8	1	2	0	0	5	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0005	218	3	1	2	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0006	218	2	0	2	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0007	218	1	0	0	1	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0008	218	1	0	0	1	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0009	218	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	a0010	218	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTO1_chr10_104249892_104272455	1/1	a0001	241	287	82	39	132	7	25	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	a0002	241	70	7	17	36	4	6	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	a0003	240	18	4	4	5	0	5	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	a0004	241	1	0	0	1	0	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	a0005	241	1	1	0	0	0	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	a0006	241	1	0	0	0	1	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO2_chr10_104264184_104309950	0/1	a0001	243	173	77	19	56	5	15	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	1/0	a0002	243	126	16	31	60	7	11	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	a0003	243	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTP1_chr11_67578812_67591653	1/1	a0001	191	255	46	36	134	12	25	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	a0002	191	123	47	30	31	6	9	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	a0003	191	11	0	5	0	0	6	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	a0004	191	1	0	1	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	a0005	191	1	0	0	1	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	a0006	191	1	1	0	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTT2B_chr22_23952414_23966195	0/1	a0001	244	105	22	26	45	1	10	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0002	244	3	3	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0003	244	2	0	0	2	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0004	195	2	0	0	2	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0005	195	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0006	244	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0007	244	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0008	244	1	0	1	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0009	244	1	1	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0010	244	1	0	0	0	1	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	a0011	244	1	0	1	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT4_chr22_23993401_24010453	1/0	a0001	241	76	7	6	53	4	5	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	a0002	241	48	14	13	14	2	5	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	a0003	241	31	1	1	28	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	a0004	241	2	0	0	0	0	2	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	a0005	241	1	1	0	0	0	0	copy fasta	GSTT4	chr22	23993401	24010453