JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GTPBP6_chrX_299759_323796	0/0	a0026	516	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0027	103	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0028	103	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0029	35	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP8_chr3_112985984_113006969	1/1	a0001	284	429	78	69	227	13	40	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	a0002	284	20	16	3	0	1	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	a0003	284	3	0	0	1	0	2	copy fasta	GTPBP8	chr3	112985984	113006969
GTSE1_chr22_46291870_46335810	0/1	a0001	739	118	30	31	38	1	17	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0002	739	28	21	3	0	2	2	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0003	739	13	12	1	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0004	739	7	6	1	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0005	739	6	6	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0006	739	6	4	2	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	1/0	a0007	739	5	1	2	0	1	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0008	739	4	4	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0009	739	2	0	0	2	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0010	739	2	2	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0011	739	1	0	0	0	0	1	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0012	739	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0013	739	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0014	739	1	0	0	0	0	1	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0015	739	1	0	0	1	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0016	739	1	0	0	0	0	1	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0017	739	1	0	0	1	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0018	739	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	a0019	739	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSF1L_chr20_43721164_43732002	1/1	a0001	148	408	85	66	195	16	44	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0002	148	6	1	5	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0003	148	2	0	2	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0004	148	2	2	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0005	148	1	0	0	1	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0006	148	1	0	1	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0007	148	1	1	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	a0008	148	1	1	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1_chr12_54450957_54478602	1/1	a0001	167	359	88	69	146	14	40	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	a0002	167	1	0	1	0	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GUCA1ANB_chr6_42150406_42168418	1/1	a0001	112	444	94	85	195	18	50	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	a0002	112	4	3	1	0	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	a0003	112	1	0	0	1	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	a0004	112	1	1	0	0	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1A_chr6_42168364_42185056	1/1	a0001	201	407	97	71	185	16	36	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	a0002	201	2	2	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	a0003	201	1	1	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	a0004	201	1	0	1	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	a0005	201	1	0	0	1	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1B_chr6_42178284_42199956	1/1	a0001	200	413	98	70	189	14	40	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	a0002	200	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	a0003	200	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	a0004	200	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	a0005	200	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956