JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GUCA1C_chr3_108902792_108958879	1/0	a0001	209	141	27	26	74	3	10	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0002	209	112	33	23	38	5	13	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/1	a0003	209	100	19	29	29	4	18	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0004	209	6	6	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0005	209	5	0	2	0	0	3	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0006	209	3	3	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0007	209	3	3	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0008	209	2	2	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0009	209	1	1	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	a0010	209	1	0	0	1	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA2A_chr1_42157690_42169745	1/0	a0001	115	286	81	39	136	3	26	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/1	a0002	115	138	7	37	60	11	22	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	a0003	115	6	0	0	6	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	a0004	115	2	2	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	a0005	115	2	0	2	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	a0006	115	1	1	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	a0007	115	1	1	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2B_chr1_42148410_42160820	1/1	a0001	112	367	77	75	169	12	32	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	a0002	112	68	8	9	37	2	12	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	a0003	112	2	2	0	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	a0004	112	2	0	0	2	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	a0005	108	1	0	0	1	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	a0006	112	1	1	0	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	a0007	112	1	0	0	1	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCD1_chr22_24535438_24560138	1/1	a0001	239	413	91	76	176	18	50	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	a0002	239	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCY1A1_chr4_155661848_155742059	1/1	a0001	690	305	68	67	114	14	40	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	a0002	690	13	13	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	a0003	690	10	9	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	a0004	690	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	a0005	690	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A2_chr11_106669019_107023476	1/1	a0001	732	255	76	50	80	14	33	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	a0002	732	1	0	0	0	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1B1_chr4_155754021_155812811	1/1	a0001	619	358	91	77	128	18	42	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	a0002	619	3	0	0	3	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	a0003	619	1	1	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	a0004	619	1	0	1	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	a0005	619	1	0	0	1	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY2C_chr12_14607632_14701599	0/1	a0001	1073	226	74	52	63	8	28	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	1/0	a0002	1073	4	3	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	a0003	1073	1	1	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	a0004	1073	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	a0005	1073	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	a0006	1073	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	a0007	1073	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	a0008	1073	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2D_chr17_7997615_8025342	0/1	a0001	1103	196	16	29	122	6	22	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	1/0	a0002	1103	104	24	37	29	6	7	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0003	1103	44	5	1	36	0	2	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0004	1103	34	19	6	0	6	3	copy fasta	GUCY2D	chr17	7997615	8025342